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gwct merged 1 commit into from
Dec 24, 2025
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adding new pubs #106

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6 changes: 3 additions & 3 deletions data/people/people.json
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Expand Up @@ -4,7 +4,7 @@
"Tim Sackton": {
"id": "1",
"name": "Tim Sackton",
"bibtex-names": ["Sackton, T. B.", "Sackton, Timothy B.", "Sackton, Timothy B", "Sackton, Tim"],
"bibtex-names": ["Sackton, T. B.", "Sackton, Timothy B.", "Sackton, Timothy B", "Sackton, Tim", "Sackton, Timothy"],
"title" : "Director of Bioinformatics",
"office" : "B227.10",
"img": "img/people/timsackton.jpg",
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"Danielle Khost": {
"id": "11",
"name": "Danielle Khost",
"bibtex-names": ["Khost, D. E.", "Khost, Danielle"],
"bibtex-names": ["Khost, D. E.", "Khost, Danielle", "Khost, D."],
"title" : "Senior Bioinformatics Scientist",
"office" : "B227.65",
"img": "img/people/daniellekhost.jpg",
Expand Down Expand Up @@ -260,7 +260,7 @@
"Ekaterina Osipova": {
"id": "31",
"name": "Katya Osipova",
"bibtex-names": ["Osipova, K.", "Osipova, Ekaterina"],
"bibtex-names": ["Osipova, K.", "Osipova, Ekaterina", "Osipova, E."],
"title" : "Postdoctoral Fellow",
"office" : "B227.65",
"img": "img/people/katyaosipova.jpg",
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1,400 changes: 1,400 additions & 0 deletions data/publications/fasifx-pubs-20251224.bib
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277 changes: 235 additions & 42 deletions data/publications/fasifx-pubs.bib
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4 changes: 2 additions & 2 deletions docs/events-workshops/index.md
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Expand Up @@ -130,14 +130,14 @@ In collaboration with the [Bauer Sequencing Core :octicons-link-external-24:](ht
Part 1 introduces students to the basics of single-cell RNA-seq analysis, including pre-processing and cleanup of data for downstream analyses.

[Download RMD file :octicons-download-24:](../workshops/short-trainings/scRNA-intro/SinglecellRNAseq.Rmd){ .md-button }
[View rendered notebook :octicons-download-24:](../workshops/short-trainings/scRNA-intro/SinglecellRNAseq.md){ .md-button }
[View rendered notebook :material-arrow-right:](../workshops/short-trainings/scRNA-intro/SinglecellRNAseq.md){ .md-button }

##### Part 2: November 5, 2025, 12:00-1:00PM (Virtual)

Part 2 covers cluster marker gene discover, cell type annotation, and for multi-sample, multi-condition experiments, assessing and correcting batch effects, and differential expression analysis across experimental conditions. Note that to run the downloadable markdown below will require generating count matrices for the samples used in the training using *cellranger count*. Until we create an option for delivering the count matrices, please contact the Informatics Group for more information.

[Download RMD file :octicons-download-24:](../workshops/short-trainings/scRNA-intro/SinglecellRNAseq_part2.Rmd){ .md-button }
[View rendered notebook](../workshops/short-trainings/scRNA-intro/SinglecellRNAseq_part2.md){ .md-button }
[View rendered notebook :material-arrow-right:](../workshops/short-trainings/scRNA-intro/SinglecellRNAseq_part2.md){ .md-button }

#### Basics of git and GitHub with GitHub Desktop

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2 changes: 1 addition & 1 deletion docs/research/index.md
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Expand Up @@ -24,7 +24,7 @@ We are a broad group with diverse expertise in the computational analysis of seq
<td><span class="twemoji research-icon" aria-label="Methods development" title="Methods development">{% include "assets/.icons/vector-polyline-plus.svg" %}</span> = Methods development</td>
</tr>
<tr>
<td><span class="twemoji" aria-label="Group alumni" title="Group alumni">{% include "assets/.icons/graduation-cap.svg" %}</span> = Group alumni</td>
<td><span class="twemoji" aria-label="Group alum" title="Group alum">{% include "assets/.icons/graduation-cap.svg" %}</span> = Group alum</td>
</tr>
</table>

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2 changes: 1 addition & 1 deletion mkdocs.yml
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Expand Up @@ -3,7 +3,7 @@ site_url: https://informatics.fas.harvard.edu/
copyright: © 2023-2025 | Harvard FAS Informatics | <a href="https://accessibility.huit.harvard.edu/digital-accessibility-policy">Digital Accessibility</a>
## Site info

nav:
nav:
- About: index.md
- Events & Workshops: events-workshops/index.md
- Research & Publications: research/index.md
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