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  1. TOGA TOGA Public

    TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact o…

    Python 201 27

  2. make_lastz_chains make_lastz_chains Public

    Portable solution to generate genome alignment chains using lastz

    Python 59 12

  3. GenomeAlignmentTools GenomeAlignmentTools Public

    Tools for improving the sensitivity and specificity of genome alignments

    C 58 16

  4. CESAR2.0 CESAR2.0 Public

    C 28 11

  5. GeneLossPipe GeneLossPipe Public

    Perl 25 7

  6. ForwardGenomics ForwardGenomics Public

    Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework

    Perl 24 8

Repositories

Showing 10 of 12 repositories
  • TOGA2 Public

    TOGA2: A faster, more versatile successor of Tool to infer Orthologs from Genome Alignments

    hillerlab/TOGA2’s past year of commit activity
    C 18 MIT 1 3 0 Updated Dec 13, 2025
  • TOGA Public

    TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.

    hillerlab/TOGA’s past year of commit activity
    Python 201 MIT 27 2 1 Updated Nov 23, 2025
  • make_lastz_chains Public

    Portable solution to generate genome alignment chains using lastz

    hillerlab/make_lastz_chains’s past year of commit activity
    Python 59 MIT 12 14 1 Updated Sep 23, 2025
  • TFforge Public

    Identifying transcription factors involved in phenotypic differences between species

    hillerlab/TFforge’s past year of commit activity
    Python 1 MIT 3 3 0 Updated Oct 27, 2024
  • REforge Public

    Regulatory Element Forward Genomics to associate transcription factor binding site divergence in regulatory elements with phenotypic differences between species

    hillerlab/REforge’s past year of commit activity
    Python 8 MIT 3 6 0 Updated Oct 27, 2024
  • GenomeAlignmentTools Public

    Tools for improving the sensitivity and specificity of genome alignments

    hillerlab/GenomeAlignmentTools’s past year of commit activity
    C 58 MIT 16 14 0 Updated Jan 17, 2024
  • IterativeErrorCorrection Public

    Iterative error correction of long reads

    hillerlab/IterativeErrorCorrection’s past year of commit activity
    Python 13 MIT 3 4 1 Updated Dec 9, 2022
  • CESAR2.0 Public
    hillerlab/CESAR2.0’s past year of commit activity
    C 28 MIT 11 8 0 Updated Dec 1, 2022
  • GeneLossPipe Public
    hillerlab/GeneLossPipe’s past year of commit activity
    Perl 25 MIT 7 2 0 Updated Nov 29, 2022
  • ForwardGenomics Public

    Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework

    hillerlab/ForwardGenomics’s past year of commit activity
    Perl 24 MIT 8 9 0 Updated Nov 29, 2022
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