Update wrapper.py

tpall · web-flow · commit ef0cbf7eebe8 · 2020-12-10T10:35:50.000+02:00
diff --git a/gatk/indexfeaturefile/wrapper.py b/gatk/indexfeaturefile/wrapper.py
@@ -10,5 +10,5 @@
 log = snakemake.log_fmt_shell(stdout=False, stderr=True)
 
 shell(
-    "(gatk IndexFeatureFile {extra} -I {snakemake.input[0]} -O {snakemake.output[0]}) {log}"
+    "gatk IndexFeatureFile {extra} -I {snakemake.input[0]} -O {snakemake.output[0]} {log}"
 )

Original file line number	Diff line number	Diff line change
`@@ -10,5 +10,5 @@`
`10`	`10`	`log = snakemake.log_fmt_shell(stdout=False, stderr=True)`
`11`	`11`
`12`	`12`	`shell(`
`13`		`- "(gatk IndexFeatureFile {extra} -I {snakemake.input[0]} -O {snakemake.output[0]}) {log}"`
	`13`	`+ "gatk IndexFeatureFile {extra} -I {snakemake.input[0]} -O {snakemake.output[0]} {log}"`
`14`	`14`	`)`