Virome wrappers

Snakemake wrappers for quantify-virome and discover-virome workflows.

Name		Name	Last commit message	Last commit date
Latest commit History 403 Commits
assembly		assembly
bbtools		bbtools
bcftools		bcftools
bedtools		bedtools
blast		blast
cdhit		cdhit
fastp		fastp
fastq-join		fastq-join
fastq_screen		fastq_screen
filter/masked		filter/masked
freebayes		freebayes
gatk		gatk
genome-consensus		genome-consensus
ivar/consensus		ivar/consensus
lofreq		lofreq
multiqc		multiqc
picard		picard
polyester/simulate_experiment		polyester/simulate_experiment
prepare_taxonomy_data		prepare_taxonomy_data
preprocess		preprocess
prokka		prokka
repeatmasker		repeatmasker
samtools		samtools
seqkit/stats		seqkit/stats
seqtk		seqtk
sequences		sequences
snpeff		snpeff
snpsift		snpsift
split-fasta		split-fasta
subset_fasta		subset_fasta
tantan		tantan
unique_taxons		unique_taxons
unmapped		unmapped
unmasked_viral		unmasked_viral
vcflib		vcflib
vsearch/chimera		vsearch/chimera
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md
test.py		test.py

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