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1. ecotyper-py ecotyper-py Public

   Unofficial Python implementation of EcoTyper (R) for tumour-microenvironment classification in single-cell and bulk RNA-seq, incorporation with AnnData.

   Python

2. nucleotide-decomposition nucleotide-decomposition Public

   Given a FASTA file of nucleotide (or amino acid) sequences, compute their reverse complements compare the composition of the first two sequences.

   Python

3. peak-quant peak-quant Public

   Quantify peaks in BED format to a sparse count matrix for downstream analysis, such as DEseq2.

   Python

4. digit-solver digit-solver Public

   Dynamic programming solution for arithemtic combination of integer digits with order-preservation.

   Python

5. variant-simulation variant-simulation Public

   Simulation of probability distribution of minor allele frequencies of single-nucleotide polymorphisms.

   Python

6. sleep-stage-classification-system sleep-stage-classification-system Public

   CNN-RNN unified architecture written in Tensorflow for classifying sleep stages from EEG and ECG biosignals.

   C++ 4 1