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Catch PermissionError while updating source #856

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Code review checklist:

  • Code is generally sensical and well commented
  • Variable/function names all telegraph their purpose and contents
  • Functions/classes have useful doc strings
  • Function arguments are typed
  • Added/modified unit tests to cover changes.
  • New features have documentation added to the docs.
  • New features and backwards compatibility breaks are noted in the RELEASE.md

@hwikle-lanl hwikle-lanl self-assigned this May 12, 2025
@hwikle-lanl hwikle-lanl added the bug Something isn't working label May 12, 2025
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