Create patterns notebook

[agustin-vaca]

No description provided.

[jyoung3131]

Hi @agustin-vaca - this is looking good so far. I noticed one hard-coded link to your nethome for Quicksilver, which we might need to generalize.

For this PR, can I ask you to add some basic command-line testing capability using nbmake and pytest?

As a separate BASH script is fine for now - our goal is to get these into our normal CI testing framework so we can make sure changes with the refactor don't break the notebook.

https://semaphoreci.com/blog/test-jupyter-notebooks-with-pytest-and-nbmake

1. Create a venv in the script using Python 3.9 or 3.10 (see here for a reference: https://gt-crnch-rg.readthedocs.io/en/main/general/python-environments.html)
2. pip install pytest
3. check errors on a CRNCH node to see if they make sense.
4. You can skip the semaphore and other integration since we will use GH actions.