Skip to content

Commit edda9a4

Browse files
committed
Automated report
1 parent a00ac8f commit edda9a4

208 files changed

Lines changed: 25481 additions & 24495 deletions

File tree

Some content is hidden

Large Commits have some content hidden by default. Use the searchbox below for content that may be hidden.

NOTES.md

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -6,8 +6,8 @@ Release Notes
66

77
|Ontology|Version|
88
| :---: | :---: |
9-
|PCL|2023-02-27|
109
|UBERON|2023-03-15|
10+
|PCL|2023-02-27|
1111
|CL|2023-02-19|
1212

1313
### ASCT+b Tables

docs/Blood/README.md

Lines changed: 9 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
11

2-
ASCT+B Validation Reports for Blood (2023-04-03)
2+
ASCT+B Validation Reports for Blood (2023-04-05)
33
================================================
44

55
Table of contents
@@ -80,6 +80,10 @@ The report means it could not find a partonomy relationship in the source ontolo
8080

8181

8282
**In the ASCT+B table**
83+
84+
85+
86+
8387
|AS/2|AS/2/LABEL|AS/2/ID|AS/3|AS/3/LABEL|AS/3/ID|
8488
| :---: | :---: | :---: | :---: | :---: | :---: |
8589
|lens|lens|UBERON:0000965|ciliary zonules|suspensory ligament of lens|UBERON:0006762|
@@ -90,6 +94,10 @@ The report means it could not find a partonomy relationship in the source ontolo
9094

9195

9296
**In the Relationship Report**
97+
98+
99+
100+
93101
|s|slabel|user_slabel|o|olabel|user_olabel|
94102
| :---: | :---: | :---: | :---: | :---: | :---: |
95103
|UBERON:0006762|suspensory ligament of lens|ciliary zonules|UBERON:0000965|lens|lens|
0 Bytes
Binary file not shown.

docs/Blood/graph.md

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
11

2-
ASCT+B Validation Reports for Blood (2023-04-03)
2+
ASCT+B Validation Reports for Blood (2023-04-05)
33
================================================
44

55
# ASCT+B as Graph

docs/Blood_vasculature/README.md

Lines changed: 6828 additions & 6809 deletions
Large diffs are not rendered by default.
0 Bytes
Binary file not shown.

docs/Blood_vasculature/graph.md

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
11

2-
ASCT+B Validation Reports for Blood_vasculature (2023-04-03)
2+
ASCT+B Validation Reports for Blood_vasculature (2023-04-05)
33
============================================================
44

55
# ASCT+B as Graph

docs/Blood_vasculature/report_images_Blood_vasculature.tsv

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -115,10 +115,10 @@ UBERON:0001639 http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png
115115
UBERON:0001640 http://upload.wikimedia.org/wikipedia/commons/6/65/Gray532.png
116116
UBERON:0001641 https://upload.wikimedia.org/wikipedia/commons/b/bd/Gray488_blue.gif
117117
UBERON:0001642 https://upload.wikimedia.org/wikipedia/commons/b/bd/Gray488_blue.gif
118-
UBERON:0001651 https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png
119118
UBERON:0001651 http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray504.png
120-
UBERON:0001652 http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray504.png
119+
UBERON:0001651 https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png
121120
UBERON:0001652 https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png
121+
UBERON:0001652 http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray504.png
122122
UBERON:0001653 http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png
123123
UBERON:0001654 http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png
124124
UBERON:0001656 http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png
@@ -178,8 +178,8 @@ UBERON:0007317 http://upload.wikimedia.org/wikipedia/commons/4/43/Gray549.png
178178
UBERON:0008321 http://upload.wikimedia.org/wikipedia/commons/2/2b/Gray543.png
179179
UBERON:0008783 http://upload.wikimedia.org/wikipedia/commons/4/4e/Gray581.png
180180
UBERON:0008889 http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray589.png
181-
UBERON:0009040 http://upload.wikimedia.org/wikipedia/commons/7/74/Gray586.png
182181
UBERON:0009040 http://upload.wikimedia.org/wikipedia/commons/0/07/Gray586.png
182+
UBERON:0009040 http://upload.wikimedia.org/wikipedia/commons/7/74/Gray586.png
183183
UBERON:0009041 http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray548.png
184184
UBERON:0009885 https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png
185185
UBERON:0009887 https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png

docs/Bone-Marrow/README.md

Lines changed: 11 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
11

2-
ASCT+B Validation Reports for Bone-Marrow (2023-04-03)
2+
ASCT+B Validation Reports for Bone-Marrow (2023-04-05)
33
======================================================
44

55
Table of contents
@@ -51,10 +51,10 @@ If the term's name/label and the name/label given by SME are too different, plea
5151

5252
If the name/label in the ontology contains *obsolete*, please look into OLS, clicking on the term ID, for its replacement.
5353

54-
1. In row _[55](https://docs.google.com/spreadsheets/d/1z60ZA9r8Y435skSIjRwMX_EgBK0FN9up4CFfBQ0s944/edit#gid=771476671&range=55:55)_, the term _[CL:0000938](http://purl.obolibrary.org/obo/CL_0000938)_ has different name/label in the source ontology. The name/label in the **ASCT+B table** is _CD16-negative, CD56-bright natural killer cell_ and the one in the **ontology** is _CD16-negative, CD56-bright natural killer cell, human_. For reference, the given name/label **by SMEs** is _CD56 bright Natural Killer_. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.
55-
5654
1. In row _[33](https://docs.google.com/spreadsheets/d/1z60ZA9r8Y435skSIjRwMX_EgBK0FN9up4CFfBQ0s944/edit#gid=771476671&range=33:33)_, the term _[CL:0000037](http://purl.obolibrary.org/obo/CL_0000037)_ has different name/label in the source ontology. The name/label in the **ASCT+B table** is _hemopoietic stem cell_ and the one in the **ontology** is _hematopoietic stem cell_. For reference, the given name/label **by SMEs** is _hemopoietic stem cell (HSC)_. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.
5755

56+
1. In row _[55](https://docs.google.com/spreadsheets/d/1z60ZA9r8Y435skSIjRwMX_EgBK0FN9up4CFfBQ0s944/edit#gid=771476671&range=55:55)_, the term _[CL:0000938](http://purl.obolibrary.org/obo/CL_0000938)_ has different name/label in the source ontology. The name/label in the **ASCT+B table** is _CD16-negative, CD56-bright natural killer cell_ and the one in the **ontology** is _CD16-negative, CD56-bright natural killer cell, human_. For reference, the given name/label **by SMEs** is _CD56 bright Natural Killer_. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.
57+
5858

5959
## Blank ontology ID
6060

@@ -88,6 +88,10 @@ The report means it could not find a partonomy relationship in the source ontolo
8888

8989

9090
**In the ASCT+B table**
91+
92+
93+
94+
9195
|AS/2|AS/2/LABEL|AS/2/ID|AS/3|AS/3/LABEL|AS/3/ID|
9296
| :---: | :---: | :---: | :---: | :---: | :---: |
9397
|lens|lens|UBERON:0000965|ciliary zonules|suspensory ligament of lens|UBERON:0006762|
@@ -98,6 +102,10 @@ The report means it could not find a partonomy relationship in the source ontolo
98102

99103

100104
**In the Relationship Report**
105+
106+
107+
108+
101109
|s|slabel|user_slabel|o|olabel|user_olabel|
102110
| :---: | :---: | :---: | :---: | :---: | :---: |
103111
|UBERON:0006762|suspensory ligament of lens|ciliary zonules|UBERON:0000965|lens|lens|
0 Bytes
Binary file not shown.

0 commit comments

Comments
 (0)