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Merge pull request #148 from Sri15-Inj/FUSION++
Adding FUSION_tutorials.
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src/user_templates_api/templates/jupyter_lab/templates/FUSION_tutorial/README.md

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{
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"title": "FUSION tutorial",
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"description": "This notebook provides a comprehensive guide on utilizing FUSION within the HuBMAP Workspace. FUSION-package is a digital toolkit for advanced spatial multi-omics analysis via JupyterHub. It offers step-by-step instructions, ready-to-use code, and integrated access to HuBMAP and external resources, all within a single, reproducible workflow.",
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"tags": [
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"api",
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"example",
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"visualization",
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"files"
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],
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"is_multi_dataset_template": true,
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"template_format": "jinja",
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"is_hidden": false
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}
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from user_templates_api.templates.jupyter_lab.render import JupyterLabRender
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class JupyterLabExampleJinjaRender(JupyterLabRender):
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def __init__(self):
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pass
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{
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"cells": [
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "27f63e5b",
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"metadata": {},
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"outputs": [],
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"source": [
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"# Install FUSION++\n",
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"!pip install \"git+https://github.com/SarderLab/fusion-packages.git@Fusion++_Demo\""
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "eaee45a7-2dc6-433f-abad-cd2a57148ffc",
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"metadata": {},
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"outputs": [],
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"source": [
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"# Import FUSION++\n",
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"import fusion\n",
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"# After installation, a demo notebook will be downloaded into your workapace. PATH: fusion_demo_notebooks/fusion_demo.ipynb"
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]
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}
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],
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"metadata": {
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"kernelspec": {
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"display_name": "Python 3 (ipykernel)",
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"language": "python",
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"name": "python3"
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},
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"language_info": {
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"codemirror_mode": {
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"name": "ipython",
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"version": 3
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},
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"file_extension": ".py",
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"mimetype": "text/x-python",
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.12.10"
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}
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},
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"nbformat": 4,
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"nbformat_minor": 5
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}

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