Skip to content

Commit 899da93

Browse files
chore: release 1.0.0
1 parent 3a72bf7 commit 899da93

File tree

1 file changed

+26
-0
lines changed

1 file changed

+26
-0
lines changed

Diff for: CHANGELOG.md

+26
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,26 @@
1+
# Changelog
2+
3+
## 1.0.0 (2025-01-03)
4+
5+
6+
### Features
7+
8+
* add collapsed-tree support calculations via gotree rules ([6391a79](https://www.github.com/hzi-bifo/phylogeny-of-single-cells/commit/6391a79b7e7fedbd5ad3757ede0d3bb4a225a56d))
9+
* add further plots to compare across models and missingness ([e8cebab](https://www.github.com/hzi-bifo/phylogeny-of-single-cells/commit/e8cebab5c1c36bb06daeb11f72e4681892dc2b6e))
10+
* also look at consensus tree of all maximum likelihood trees ([33c2dd7](https://www.github.com/hzi-bifo/phylogeny-of-single-cells/commit/33c2dd70ce01a7a4bd0ee07fe2a65220c39ceaea))
11+
* clean up and improve max_missing topologies summary plot ([70cd27d](https://www.github.com/hzi-bifo/phylogeny-of-single-cells/commit/70cd27dacd4444f238fccafac02a3809f48245c9))
12+
* compute and plot cluster information distance for all relevant tree sets ([9917ebb](https://www.github.com/hzi-bifo/phylogeny-of-single-cells/commit/9917ebbb81195cd3a8b5fa9d98c1da44bcefd7c4))
13+
* generate and collect bootstrap convergence and rfdist metrics ([ff634fb](https://www.github.com/hzi-bifo/phylogeny-of-single-cells/commit/ff634fb892285962236405f7ebbd150ced066cdf))
14+
* implement cluster selection and qc for more focused consensus tree ([2bf3be7](https://www.github.com/hzi-bifo/phylogeny-of-single-cells/commit/2bf3be710febf00fb98e0e747028bbdc595a1d6b))
15+
* overhaul summary plots (add information criteria, add ecdf and histogram plots) ([7f111f6](https://www.github.com/hzi-bifo/phylogeny-of-single-cells/commit/7f111f6c773470c8b6a6421b9d7c333168a5e2f5))
16+
* switch axes and facet labels in large overview plots ([89183f7](https://www.github.com/hzi-bifo/phylogeny-of-single-cells/commit/89183f72f6a4b3a651c610bc5992aaf79c8d4f49))
17+
18+
19+
### Bug Fixes
20+
21+
* adjust file name downstream of previous change ([4ef281d](https://www.github.com/hzi-bifo/phylogeny-of-single-cells/commit/4ef281dd04973e7d45f24c24047db8ade91c0626))
22+
* adjust file name extraction pattern ([7cf439e](https://www.github.com/hzi-bifo/phylogeny-of-single-cells/commit/7cf439e77cd8343dedac86b853548e54b49b2362))
23+
* allow big plots ([e79a8ce](https://www.github.com/hzi-bifo/phylogeny-of-single-cells/commit/e79a8ce27994ad93ddd4cc7e744a1a2847869839))
24+
* always compute support based on raxml-ng bootstraps with gotree ([8b08105](https://www.github.com/hzi-bifo/phylogeny-of-single-cells/commit/8b081059bac1192c23f86a3573298e4ed49bdcb8))
25+
* amend previous commit ([441d5c5](https://www.github.com/hzi-bifo/phylogeny-of-single-cells/commit/441d5c5522f1d54e31b89369bda4eb4b7d243da6))
26+
* use extended regular expressions for sed extraction ([3a72bf7](https://www.github.com/hzi-bifo/phylogeny-of-single-cells/commit/3a72bf7316bdf93dd05c40618f52a13b53e652e2))

0 commit comments

Comments
 (0)