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2.1.0-9.2.0

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@junjun-zhang junjun-zhang released this 19 Mar 19:07
· 31 commits to main since this release
2.1.0-9.2.0
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Learn about vigilant mode.
  • the Sanger WGS variant calling workflow has been converted to be a WFPM-compatible workflow package
  • now CI testing is done by GitHub Actions
  • added support for local mode in which data and metadata inputs are supplied directly by the user, instead of getting them from SONG/SCORE servers
  • added a dependent payload-add-uniform-ids@0.1.1 package to insert uniform IDs (DO/SP/SA) to user-provided SONG payload, a feature needed by the ARGO WGs for their benchmarking work
  • added test to cover the above new feature
  • switched to use helper-functions@1.0.0 for getting secondary files
  • switched to use cleanup-workdir@1.0.0 for cleaning up intermediate files upon workflow completion
  • updated payload-gen-variant-calling to 0.3.6.0 with publishDir mode set to copy
  • no change to any core algorithms

Note:

  1. compatible argo-metadata-schema versions: 0.4.0, 0.5.0
  2. requires Nextflow 20.07.1 or higher
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