sIBTEDS-Workshop-2025

R scripts for the sIBTEDS workshop — shared resources

Workshop Scripts

This repository contains R scripts that may be helpful during the workshop, as well as dedicated folders for each working group where participants can upload the scripts they create during the sessions.

Available Scripts

• Alpha & Gamma Rarefaction Curves
  Alpha and gamma rarefaction curves.

• Download Metadata from NCBI
  Download metadata from NCBI using the rentrez package.

• Maps
  Create maps like MiCoDa Version 2.

• Host Taxonomy
  Complete taxonomy of species based on scientific names using GBIF as reference.

Group Folders

Each group has its own folder where members can add the scripts they develop during the workshop:

• Animals Group
• Pampa Group
• Plants and Soils Group
• Soil Group
• Water Group
• Gram Positive and Negative Group

How to Download

• Entire repository:
  Click the green Code → Download ZIP button.

• Single file:
  Click the file name → Raw button → Download.

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Note: These files are on the main branch (main) and any updates will be recorded as commits in the repository history.