Vivarium Build Utils

NOTE: This repository has been archived.

The vivarium_build_utils package has been migrated into the vivarium-suite monorepo.

What changed

• Import path: vivarium_build_utils -> vivarium.build_utils
• Source: ihmeuw/vivarium_build_utils (archived) -> ihmeuw/vivarium-suite (under libs/build-utils/)

To migrate fully to the new package

Install:

pip install vivarium-build-utils  # no change here

Import:

import vivarium.build_utils  # was: import vivarium_build_utils

Original package overview

Vivarium Build Utils contains shared build utilities for Simulation Science projects.

You can install vivarium_build_utils from PyPI with pip:

$ pip install vivarium_build_utils

or build it from source with:

$ git clone https://github.com/ihmeuw/vivarium_build_utils.git
$ cd vivarium_build_utils
$ conda create -n ENVIRONMENT_NAME
$ pip install -e .

Overview

This repository provides:

• `vars/`: Jenkins shared library functions for continuous integration pipelines
• `resources/`: Shared Makefiles and build scripts for consistent build processes

Note: for help with the Make targets available to any environment with this repository installed, run make help in the terminal.

Monorepo support

vivarium_build_utils supports both standalone repos and monorepos where many packages live under libs/<pkg>/. Standalone repos keep working with no changes; the sections below describe what's needed for a monorepo.

Top-level Jenkinsfile (provisioner)

The monorepo's root Jenkinsfile calls monorepo() to provision a Multibranch Pipeline for each per-package Jenkinsfile. Run this on the default branch only:

@Library('vivarium_build_utils') _

monorepo(
    jenkinsfiles: [
        'libs/core/Jenkinsfile',
        'libs/public-health/Jenkinsfile',
    ],
    // Jenkins credential ID for the GitHub App. Required, no default; vbu
    // stays org-agnostic so the literal UUID lives next to the org context.
    githubCredentialsId: 'fad62062-b1f4-447b-997f-005d6b1ea41e',
    folderPrefix: 'Public',  // optional, defaults to "Public"
)

The provisioned pipelines land under <folderPrefix>/<repo>/libs/<pkg>/.

Per-package Jenkinsfile

Each libs/<pkg>/Jenkinsfile calls reusable_pipeline() the same way a standalone repo would, with one new argument:

@Library('vivarium_build_utils') _

reusable_pipeline(
    test_types: ['unit', 'integration'],
    deployable: true,
    env_reqs: 'ci_jenkins',  // pyproject.toml extra to install
)

env_reqs selects which [project.optional-dependencies] extra make install pulls in. Omit it (or leave empty) on standalone repos to keep base.mk's default of dev.

Deployable callers (deployable: true) can also pass github_credentials_id: '<jenkins-credential-id>' to override the git credential used at deploy time for pushing the release tag. When omitted, the deploy stage falls back to the credential configured on the Multibranch Pipeline's branch source, which is the right default for most repos.

Tag prefix

The TAG_PREFIX environment variable controls both make tag-version and make validate-tag. It must be set consistently in both targets, or validate-tag will silently look at the wrong set of tags.

• Standalone repos: leave unset. Tags are v<X.Y.Z>.
• Monorepo libs: set TAG_PREFIX=vivarium-<lib>- (e.g. vivarium-core-). Tags become vivarium-<lib>-v<X.Y.Z>.

Release workflows that invoke make validate-tag or make tag-version should export TAG_PREFIX before running them.

Fetching from internal Artifactory

IHME_PYPI defaults to the internal Artifactory URL and is woven into EXTRA_INDEX_FLAGS for make install. Override it to empty (make install IHME_PYPI=) in environments that can't reach IHME's network (e.g. GitHub Actions runners). make deploy-package-artifactory requires a non-empty IHME_PYPI and is Jenkins/internal-only.