Vivarium Dependencies

Vivarium Dependencies contains dependency constraints commonly used in Simulation Science repositories.

Usage

A downstream repository can use Vivarium Dependencies to define a setup dependency by including the desired constraint(s) in the install_requires dictionary of its setup.py:

# setup.py
...
if __name__ == "__main__":
  ...
  install_requirements = [
    "vivarium_build_utils[layered_config_tree,pandas]"
    ...
  ]
  ...
  interactive_requirements = ["vivarium_dependencies[interactive]"]
  ...
...

Installation

You can build vivarium_dependencies from source with:

$ git clone https://github.com/ihmeuw/vivarium_dependencies.git
$ cd vivarium_dependencies
$ conda create -n ENVIRONMENT_NAME
$ pip install -e .