Add yaml configuration/ parsing of Extraction Configuration#12
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patricktnast merged 55 commits intomainfrom Jan 16, 2026
Merged
Add yaml configuration/ parsing of Extraction Configuration#12patricktnast merged 55 commits intomainfrom
patricktnast merged 55 commits intomainfrom
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…h are defined in a particular way.
tests/test_extraction.py
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| assert pattern1.extract_percall is True | ||
| assert pattern1.extract_ncalls is True | ||
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| # Pattern with custom template |
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mybe check name the following two patterns as well?
| def test_from_yaml_mixed_patterns(self): | ||
| """Test parsing YAML with various pattern configurations and templates.""" | ||
| yaml_content = """ | ||
| patterns: |
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I don't know the overlap w/ defaults, but is this testing both a full replacement as well as a partial replacement?
stevebachmeier
approved these changes
Jan 12, 2026
albrja
approved these changes
Jan 12, 2026
rmudambi
approved these changes
Jan 13, 2026
…/ihmeuw/vivarium_profiling into pnast/refactor/mic-6373-plotting
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Add yaml configuration/ parsing of Extraction Configuration
Description
feature
Changes and notes
We made the 'extraction configuration' but didn't make it actually configurable by the user. this proposed a yaml syntax to be able to do that.
Verification and Testing