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xiuliren pushed a commit that referenced this pull request Mar 21, 2023
* Add files via upload

* boundary augmentation

* commented reneu

* commentted reneu

* added

* stuff

* made change

* tensorboard

* here

* changes

* changes

* change

* yes

* changes
xiuliren added a commit that referenced this pull request Apr 9, 2023
* Merge pull request #1 from flatironinstitute/main (#19)

* Add files via upload

* boundary augmentation

* commented reneu

* commentted reneu

* added

* stuff

* made change

* tensorboard

* here

* changes

* changes

* change

* yes

* changes

* update the samples

* loaded image chunks, but the image dimension is not correctly handled

* fixed a bug of patch cutout

* add cleanup script to clean up the files produced during training

* affinity map training is still not working. the random_patch function is not calling the inherited transform function

* fix some array size

* affinity map training is working

---------

Co-authored-by: Manuel Paez <[email protected]>
xiuliren added a commit that referenced this pull request Apr 27, 2023
* Merge pull request #1 from flatironinstitute/main (#19)

* Add files via upload

* boundary augmentation

* commented reneu

* commentted reneu

* added

* stuff

* made change

* tensorboard

* here

* changes

* changes

* change

* yes

* changes

* update the samples

* loaded image chunks, but the image dimension is not correctly handled

* fixed a bug of patch cutout

* add cleanup script to clean up the files produced during training

* affinity map training is still not working. the random_patch function is not calling the inherited transform function

* fix some array size

* changes to ba file

* print more info

* save the status, not working yet. The patch location generators are done.

* initial

* rename patch_location_generator to patch_bounding_box_generator

* documentation

* inherite from trainerbase to fix a bug of target to be all zero.

* whole brain volume sampler

---------

Co-authored-by: Manuel Paez <[email protected]>
Co-authored-by: Manuel Paez <[email protected]>
Co-authored-by: mannypaeza <[email protected]>
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2 participants