AFNI single-subject t-test without the additional motion regressors

afni_no_motion_regressors/README.md

@@ -0,0 +1,11 @@
+AFNI single subject t-test results from subject 01, tone counting task, taken from OpenfMRI (BIDS) DS000011 classification learning and tone counting experiment. 
+
+The six motion regressors (for rotations and shifts) have been removed from the model. 
+
+Contrast used:
+tone counting vs. baseline
+
+For a description of the task, see:
+
+https://openfmri.org/dataset/ds000011/
+

afni_no_motion_regressors/batch.sh

@@ -0,0 +1 @@
+3dclust -1Dformat -nosum -1dindex 2 -1tindex 2 -2thresh -3.406 3.406 -inmask -dxyz=1 -savemask Clust_mask 1.01 2 ./afni_no_motion_regressors/sub_001.results/stats.sub_001+tlrc.HEAD

afni_no_motion_regressors/cmd.ap.sub_001

@@ -0,0 +1,37 @@
+#!/usr/bin/env tcsh
+
+# created by uber_subject.py: version 0.37 (April 14, 2015)
+# creation date: Wed Mar  2 09:54:17 2016
+
+# set data directories
+set top_dir   = ./afni_no_motion_regressors
+
+# set subject and group identifiers
+set subj      = sub_001
+set group_id  = DS0011
+
+# run afni_proc.py to create a single subject processing script
+afni_proc.py -subj_id $subj                                        \
+        -script proc.$subj -scr_overwrite                          \
+        -blocks tshift align tlrc volreg blur mask scale regress   \
+        -copy_anat $top_dir/sub-01_T1w.nii.gz                      \
+        -tcat_remove_first_trs 0                                   \
+        -dsets $top_dir/sub-01_task-tonecounting_bold.nii.gz       \
+        -volreg_align_to third                                     \
+        -volreg_align_e2a                                          \
+        -volreg_tlrc_warp                                          \
+        -blur_size 4.0                                             \
+       -regress_stim_times                                         \
+            $top_dir/tone_counting_onset_times.txt                 \
+            $top_dir/tone_counting_probe_duration.txt              \
+        -regress_stim_labels                                       \
+            tone_counting probe                                    \
+        -regress_basis_multi                                       \
+            'BLOCK(4)' 'dmBLOCK'                                   \
+        -regress_stim_types                                        \
+            times AM1                                              \
+        -regress_censor_motion 0.3                                 \
+        -regress_make_ideal_sum sum_ideal.1D                       \
+        -regress_est_blur_epits                                    \
+        -regress_est_blur_errts
+