ideas-neural-circuit-analysis

Toolkit containing Inscopix secondary analysis tools available on IDEAS.

Correlations Tool

Single Analysis Tool

To run the correlations tool, execute the following CLI command:

ideas tools run correlations --inputs data/correlations/inputs.json 

Combine and Compare Analysis Tool

To run the combine and compare correlations tool, execute the following CLI command:

ideas tools run combine_compare_correlation_data --inputs data/combine_compare_correlation_data/inputs.json 

Population Activity Tool

Single Analysis Tool

To run the population activity tool, execute the following CLI command:

ideas tools run population_activity --inputs data/population_activity/inputs.json 

Combine and Compare Analysis Tool

To run the combine and compare population activity tool, execute the following CLI command:

ideas tools run combine_compare_population_activity_data --inputs data/combine_compare_population_activity_data/inputs.json 

Peri-Event Workflow Tool

Single Analysis Tool

To run the peri-event tool, execute the following CLI command:

ideas tools run peri_event_workflow --inputs data/peri_event_workflow/inputs.json

Combine and Compare Analysis Tool

To run the combine and compare peri-event data tool, execute the following CLI command:

ideas tools run combine_compare_peri_event_data --inputs data/combine_compare_peri_event_data/inputs.json