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Fix message #16

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Fix message #16

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6ba590c
Fix message
manabuishii Mar 24, 2024
19783a4
Update to use MINE_NAME
manabuishii Mar 24, 2024
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4 changes: 2 additions & 2 deletions intermine_builder/build.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -85,7 +85,7 @@ if [ ! -f /home/intermine/.intermine/${MINE_NAME:-biotestmine}.properties ]; the
cp /home/intermine/intermine/configs/${MINE_NAME:-biotestmine}.properties /home/intermine/.intermine/
fi

echo -e "$(date +%Y/%m/%d-%H:%M) Set properties in .intermine/${MINE_NAME:-biotestmine}.properties to\nPSQL_DB_NAME\tbiotestmine\nPSQL_USER\t$PSQL_USER\nPSQL_PWD\t$PSQL_PWD\nTOMCAT_USER\t$TOMCAT_USER\nTOMCAT_PWD\t$TOMCAT_PWD\nGRADLE_OPTS\t$GRADLE_OPTS" #>> /home/intermine/intermine/build.progress
echo -e "$(date +%Y/%m/%d-%H:%M) Set properties in .intermine/${MINE_NAME:-biotestmine}.properties to\nPSQL_DB_NAME\t${MINE_NAME}\nPSQL_USER\t$PSQL_USER\nPSQL_PWD\t$PSQL_PWD\nTOMCAT_USER\t$TOMCAT_USER\nTOMCAT_PWD\t$TOMCAT_PWD\nGRADLE_OPTS\t$GRADLE_OPTS" #>> /home/intermine/intermine/build.progress

#sed -i "s/PSQL_PORT/$PGPORT/g" /home/intermine/.intermine/${MINE_NAME:-biotestmine}.properties
sed -i "s/PSQL_DB_NAME/${MINE_NAME:-biotestmine}/g" /home/intermine/.intermine/${MINE_NAME:-biotestmine}.properties
Expand Down Expand Up @@ -138,7 +138,7 @@ else
if [ ! -d /home/intermine/intermine/data/malaria ]; then
echo "$(date +%Y/%m/%d-%H:%M) Copy malria-data to ~/data" #>> /home/intermine/intermine/build.progress
mkdir -p /home/intermine/intermine/data/
cp /home/intermine/intermine/biotestmine/data/malaria-data.tar.gz /home/intermine/intermine/data/
cp /home/intermine/intermine/${MINE_NAME:-biotestmine}/data/malaria-data.tar.gz /home/intermine/intermine/data/
cd /home/intermine/intermine/data/
tar -xf malaria-data.tar.gz
rm malaria-data.tar.gz
Expand Down