DataAnalysisZooMS

(Work in Progress) Quarto Manuscript for data analysis workflows for MALDI-TOF ZooMS.

It is comprised of 5 modules:

• MS data preparation
• Preprocessing
• Species identification
• Clustering
• Estimation of deamidation

These modules are described in different notebooks:

• preprocessing.qmd for MS data preparation and preprocessing done in R
• preprocess_python.ipynb for preprocessing done in Python
• PAMPA.ipynb for species identification using PAMPA
• SpecieScan.ipynb for species identification in SpecieScan
• clustering.ipynb for clustering
• deamidation.qmd for estimation of deamidation