r20250909
Pre-release
What's Changed
- Integrating more contrasts in the MSD dataset by @plbenveniste in #56
- Evaluation of existing SCT methods by @plbenveniste in #64
- Updated dataset analysis code by @plbenveniste in #66
- Training on compute canada by @plbenveniste in #57
- Code for article writing by @plbenveniste in #63
- Code reorganization by @plbenveniste in #69
Full Changelog: r20250626...r20250909
Release content
This release was done for the 2025 article submission: "TEXT TO BE INSERTED HERE". It contains the weights of the model and the code used to train, test and evaluate the model. The data used is displayed in dataset_2025-04-15_seed42.json. The model was trained using the following nnUNet plans nnUNetResEncUNetL1x1x1_Model2_Plans.json.
The dataset versions are the following:
basel-mp2rage: commit c54b3fb0fad8fa07baedb724ce9d919a73854e6e
bavaria-quebec-spine-ms-unstitched: commit f44f92b39eadd4276f0f689c96e63954051aea32
canproco: commit 7daf5ed2abc4304b45d6c81364ed06df0fc1f7c4
ms-basel-2018: commit cfddb0ed1aee701ef512631edb6016bcc29ef47b
ms-basel-2020: commit 92ec31c142bc01cc37957742fcf318d55b7ef80d
ms-karolinska-2020: commit d81e0c7a5aa8092df274f8d88827b64b4e1b4dc4
ms-nmo-beijing: commit 3359fc242e02367bb2373fd3f8809c1ea8624ced
ms-nyu: commit fd9f1880d639e7ef169daa11396c1f1b1687fde9
ms-rennes-mp2rage: commit 4a6b2d32bf7dca400d96a17d71eb749b0db4b4eb
nih-ms-mp2rage: commit 14b7c9fbc73613ae49cdbacb555a55d8fb071605
sct-testing-large: commit 132f9c8387335601960fbc2968f59b626f8e285c
umass-ms-ge-excite1.5: commit 18125775b55a21aac1ee8fcb0cc60cd1622e5349
umass-ms-ge-hdxt1.5: commit 503f28b65b0d3cdbb99f790daec4a976b35c0ffc
umass-ms-ge-pioneer3: commit 89cf98a82f951c96cd9517cc5e201a36be490dfd
umass-ms-siemens-espree1.5: commit ab24170b5a0e1fbbb63d5631d1a7052ad0197982
The version of the canproco code is the following (for the exclude file)
canproco: commit 52d5b40bd406aa467bc60013f139bc901f22a1a2
SCT version: commit dd0faf4df1a6750e7fc107b8dbb73f96cf1bf507
