FOV Dropout Detection

Installation

To install the dropout detection tool simply run the following commands

$ git clone https://github.com/jacobquon/fov_dropouts.git
$ cd fov_dropouts
$ pip install .

Alternatively, if you don't want the workbook install directly from git using

$ pip install git+https://github.com/jacobquon/fov_dropouts.git

How to use

Please refer to the demo for how to use the dropout detection package.

Should you like to run a basic pipeline across numerous barcodes a simple group of wrapper scripts is provided. Run the following command for more information:

$ python dropout_QC_slurm.py -h