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@janelia-cellmap

CellMap Project Team

Using computer vision and machine learning techniques to scalably detect subcellular structures, such as organelles, in datasets generated with next-gen vEM

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  1. dacapo dacapo Public

    A framework for easy application of established machine learning techniques on large, multi-dimensional images.

    Python 55 10

  2. cellmap-models cellmap-models Public

    Repository of model architectures and network weights used for CellMap segmentations.

    Python 14

  3. cellmap-data cellmap-data Public

    Utility for loading CellMap data for machine learning training, utilizing PyTorch, TensorStore, Xarray, and PyDantic.

    Python 3 1

  4. cellmap-segmentation-challenge cellmap-segmentation-challenge Public

    Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for training 2D and 3D models, workflows for prediction and post…

    Python 33 9

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