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Description
When generating a dataset we add s0 to support mutiscale but we are missing metadata
cellmap-flow/cellmap_flow/blockwise/blockwise_processor.py
Lines 123 to 132 in adbd54f
| array = prepare_ds( | |
| DirectoryStore(self.output_path / channel / "s0"), | |
| output_shape, | |
| dtype=self.dtype, | |
| chunk_shape=self.block_shape, | |
| voxel_size=self.output_voxel_size, | |
| axis_names=["z", "y", "x"], | |
| units=["nm", "nm", "nm"], | |
| offset=(0, 0, 0), | |
| ) |
Can get inspired by
https://github.com/janelia-cellmap/cellmap-analyze/blob/a84d249f9689c74d8d509de359c878d85b6704ba/src/cellmap_analyze/util/zarr_util.py#L43-L70
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