Code Quality Improvements and Development Infrastructure Updates

[jbohnslav]

PR: Code Quality Improvements and Development Infrastructure Updates

Major Changes

1. Development Infrastructure

   • Added GitHub Actions workflows for CI/CD:
     • Main workflow for testing
     • GPU-specific workflow
     • Pre-commit checks
   • Introduced pre-commit hooks with Ruff linting
   • Added CODEOWNERS file for code review management
   • Added pytest configuration and new test infrastructure

2. Dependency Management

   • Migrated to requirements.txt for version management
   • Updated Docker configurations
   • Added setup tests script

3. Code Quality

   • Implemented Ruff linting across the codebase
   • Removed deprecated comments and cleaned up code
   • Fixed various linting issues across multiple modules
   • Improved test coverage and reliability

4. Technical Improvements

   • Changed default stride to 1
   • Added length saving functionality
   • Fixed test suite and added download script
   • Documentation updates across multiple files

Documentation Updates

• Added new testing documentation
• Updated installation guides
• Enhanced Docker usage documentation
• Improved getting started guide
• Updated performance documentation

Impact

These changes significantly improve the project's maintainability, development workflow, and code quality while ensuring better testing coverage and continuous integration practices.

Testing

• All tests are passing
• New test infrastructure has been added
• Integration tests have been updated and fixed

[Copilot]

Copilot reviewed 111 out of 117 changed files in this pull request and generated no comments.

Files not reviewed (6)

• .style.yapf: Language not supported
• CODEOWNERS: Language not supported
• README.md: Evaluated as low risk
• deepethogram/init.py: Evaluated as low risk
• deepethogram/main.py: Evaluated as low risk
• deepethogram/callbacks.py: Evaluated as low risk