GitHub - jdiez/VcfPythonUtils: python utilities to work with Variant Call Format files (VCF)

Amit Indap

Name		Name	Last commit message	Last commit date
Latest commit History 415 Commits
PythonNotebooks		PythonNotebooks
docs		docs
Per_sample_variantEvalGenotypeConcordance.py		Per_sample_variantEvalGenotypeConcordance.py
README.md		README.md
VcfFile.py		VcfFile.py
VcfGenotype.py		VcfGenotype.py
VcfMetaLines.py		VcfMetaLines.py
VcfPed.py		VcfPed.py
VcfRecord.py		VcfRecord.py
VcfSampleEval.py		VcfSampleEval.py
add-nonVariantVcfRecords.py		add-nonVariantVcfRecords.py
describe_vcf_filter_header.py		describe_vcf_filter_header.py
describe_vcf_format_header.py		describe_vcf_format_header.py
describe_vcf_info_header.py		describe_vcf_info_header.py
phred_scale.py		phred_scale.py
tpedToVcf.py		tpedToVcf.py
variantEvalGenotypeConcordance.py		variantEvalGenotypeConcordance.py
vcf_TwoBitExtract.py		vcf_TwoBitExtract.py
vcf_callrate.py		vcf_callrate.py
vcf_combineVariants-format-compare.py		vcf_combineVariants-format-compare.py
vcf_extract_variantclass.py		vcf_extract_variantclass.py
vcf_format-table.py		vcf_format-table.py
vcf_genotypeSummary.py		vcf_genotypeSummary.py
vcf_gt-filter.py		vcf_gt-filter.py
vcf_intersect.py		vcf_intersect.py
vcf_mafcut.py		vcf_mafcut.py
vcf_median_sitedepth.py		vcf_median_sitedepth.py
vcf_mendel_discrete_filtering.py		vcf_mendel_discrete_filtering.py
vcf_nrdLog_analysis.py		vcf_nrdLog_analysis.py
vcf_pysam_allele_pileup.py		vcf_pysam_allele_pileup.py
vcf_removeSamples.py		vcf_removeSamples.py
vcf_toBed4.py		vcf_toBed4.py
vcf_variantclass_summary.py		vcf_variantclass_summary.py

Provide feedback