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Document FlowJAX SBI DESI wedge workflow#4

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Document FlowJAX SBI DESI wedge workflow#4
cursor[bot] wants to merge 1 commit into
refactor_codebase_graphwebfrom
cursor/research-code-documentation-bdaf

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@cursor cursor Bot commented Jul 6, 2026

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Summary

  • Added workflows/sbi_inference/README.md as the canonical local guide for FlowJAX/SBI DESI wedge posterior inference.
  • Updated README.md, ACTIVE_WORKFLOWS.md, and RUNBOOK.md to index the SBI path alongside the existing GAT and Jraph workflows.
  • Added a status note to workflows/sbi_inference/CLUSTER_DEFICIT_FIX_PLAN.md so the older plan points to current CLI flags and docs.

Codepaths covered

  • workflows/sbi_inference/infer_desi_wedge_flowjax.py
  • workflows/sbi_inference/plot_desi_wedge_flowjax.py
  • workflows/sbi_inference/infer_abacus_self_flowjax.py
  • workflows/sbi_inference/build_desi_wedge_property_join.py
  • workflows/sbi_inference/plot_property_environment_closure.py
  • scripts/sync_figures_to_canonical.sh

Knowledge gaps addressed

  • Clarified Mpc coordinate parity, fixed DESI node-feature ordering, path1 edge-scaler requirements, and ILLUSTRIS_ROOT import behavior.
  • Documented matching model/cache constraints for --scale-invariant-features and marked node/edge domain adaptation flags as diagnostics.
  • Captured expected inference outputs, plot overlays, property-join behavior, duplicate TARGETID handling, and figure sync behavior.

Validation

  • python3 path existence check for referenced docs/codepaths
  • git diff --check

Notes

  • graphify was not available in this environment, so graph metadata was not refreshed.
  • The shared Illustris SCIENCE_LOG.md path was not present in this container, so that cross-project log entry still needs to be added from an environment with the sibling Illustris checkout.
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Co-authored-by: Dakshesh Kololgi <jdpkololgi@users.noreply.github.com>
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