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Tidal Stratified Flow over Shallow Supercritical Topography

Code to generate the simulations reported in "Saturation of Internal Tide Generation over Shallow Supercritical Topography" by Chang, J-X and Klymak, J. M.

Some Runs on CEDAR.computecanada.ca

Contents:

  • MITgcm66h is my version with NF90io.
  • input is where most model setup occurs.
  • python is where most processing occurs.

Vagaries

  • cannot seem to get netcdf to work
  • work in project/jxchang/. I do a softlink: ln -s /home/jxchang/project/jxchang/TallRid_nonhydr TallRid_nonhydr.
  • link 'results/' to /home/jxchang/scratch/TallRid_nonhydr

To compile on Cedar

  • module load gcc openmpi
  • cd build/
  • ../MITgcm66h/tools/genmake2 -optfile=../build_options/cedargcc -mods=../code/ -rootdir=../MITgcm66h --mpi
  • OPTIONAL: make CLEAN to make sure no bad compiled files are left over
  • make depend
  • make

To run

  • run python gendata.py
  • run sbatch -J jobname runModel.sh where "jobname" is the directory where you put the "results"
  • run sq to see what progress is...