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1. bayesVG bayesVG Public

   Identify variable genes in scRNA-seq and spatially-resolved transcriptomics data using approximate Bayesian inference

   R 2

2. scLANE scLANE Public

   Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.

   R 16 3

3. genesetGPT genesetGPT Public

   Annotate and summarize gene sets derived from transcriptomics data using LLMs.

   Python

4. SCISSORS SCISSORS Public

   SCISSORS builds upon the Louvain graph-based clustering in Seurat by optimizing parameter selection when reclustering cell groups, with an eye towards identifying rare cell types.

   R 15 2

5. quarto-site quarto-site Public

   My personal website

   JavaScript

6. bash bash Public

   Next generation sequencing pipelines that I've written.

   Shell