v0.8.2

.bumpversion.cfg

@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 0.8.1
+current_version = 0.8.2
 commit = True
 tag = False
 parse = (?P<major>\d+)\.(?P<minor>\d+)\.(?P<patch>\d+)(\-(?P<release>[a-z]+)(?P<build>\d+))?

changelog.rst

@@ -1,7 +1,18 @@
 Changelog
 =========
 
-Last change: 15-JUL-2025 MTS
+Last change: 11-AUG-2025 MTS
+
+0.8.2
+-----
+- Added docstrings and data types in all modules (``postprocess``, ``simulate``, ``render``, ``nanotron``, ``localize``, ``lib``, ``io``, ``imageprocess``, ``gaussmle``, ``gausslq``, ``design``, ``clusterer``, ``aim``, ``avgroi`` and ``zfit``)
+- Fix one click installer issues for non-administrator users
+- Render allows for saving picked localizations in a separate file for each pick
+- Remaining time estimate in the progress dialog
+- Fix garbage collection when openinging ``.nd2`` files in Localize
+- Fix 3D rotation window for a polygon pick
+- Render minimap - the zoom-in window is always visible
+- Other small fixes and improvements
 
 0.8.1
 -----
@@ -13,7 +24,7 @@ Last change: 15-JUL-2025 MTS
 0.8.0
 -----
 - **New module SPINNA for investigating oligormerization of proteins** , `DOI: 10.1038/s41467-025-59500-z <https://doi.org/10.1038/s41467-025-59500-z>`_
-- **NeNA bug fix - old values were (usually) too high by a ~sqrt(2) **
+- **NeNA bug fix - old values were (usually) too high by a ~sqrt(2)**
 - NeNA bug fix - less prone to fitting to local maximum leading to incorrect values
 - NeNA plot - displays distances in nm
 - Fiducial picking - filter out picks too few localizations (80% of the total acquisition time)

distribution/picasso.iss

@@ -2,10 +2,10 @@
 AppName=Picasso
 AppPublisher=Jungmann Lab, Max Planck Institute of Biochemistry
 
-AppVersion=0.8.1
+AppVersion=0.8.2
 DefaultDirName={commonpf}\Picasso
 DefaultGroupName=Picasso
-OutputBaseFilename="Picasso-Windows-64bit-0.8.1"
+OutputBaseFilename="Picasso-Windows-64bit-0.8.2"
 ArchitecturesAllowed=x64
 ArchitecturesInstallIn64BitMode=x64
 

docs/conf.py

@@ -26,7 +26,7 @@
 # The short X.Y version
 version = ""
 # The full version, including alpha/beta/rc tags
-release = "0.8.1"
+release = "0.8.2"
 
 # -- General configuration ---------------------------------------------------
 

docs/faq.rst

@@ -6,7 +6,7 @@ Localize
 
 What doest MLE / LQ stand for?
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-- MLE, integrated Gaussian (based on `Smith et al., 2014 <https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2862147/>`_.)
+- MLE, integrated Gaussian (based on `Smith et al., 2010 <https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2862147/>`_.)
 - LQ, Gaussian (least squares)
 
 

docs/localize.rst

@@ -7,7 +7,7 @@ localize
 
 Localize allows performing super-resolution reconstruction of image stacks. For spot detection, a gradient-based approach is used. For Fitting, the following algorithms are implemented:
 
-- MLE, integrated Gaussian (based on `Smith et al., 2014 <https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2862147/>`_.)
+- MLE, integrated Gaussian (based on `Smith et al., 2010 <https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2862147/>`_.)
 - LQ, Gaussian (least squares)
 - Average of ROI (finds summed intensity of spots)
 

picasso/__init__.py

@@ -8,7 +8,7 @@
 import os.path as _ospath
 import yaml as _yaml
 
-__version__ = "0.8.1"
+__version__ = "0.8.2"
 
 _this_file = _ospath.abspath(__file__)
 _this_dir = _ospath.dirname(_this_file)