hnet

Repository of path construction algorithms based on patient admission and drug prescriptions using clinical datasets.

To replicate the experiments, you need access to ADMISSIONS.csv and PRESCRIPTIONS.csv files from MIMIC-III Clinical Database, which need to be present in the data subdirectory inside hnet directory.

Running the project

virtual environment

1. cd into the hnet directory
2. On Linux/MacOS:
   1. python3 -m venv venv
   2. source venv/bin/activate
   3. pip3 install -r requirements.txt
   4. python3 source/main.py
3. On Windows:
   1. python -m venv venv
   2. venv\Scripts\activate.bat
   3. pip install -r requirements.txt
   4. python source/main.py

Docker

1. make build or docker build -t hnet .
2. make run-hnet or docker-compose up -d && docker exec -it hnet python3 source/main.py