Skip to content

Update installation instructions for GEOQuery - replace expired URL #18

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
olp-cs wants to merge 2 commits into
base: master
Choose a base branch
from
Open

Update installation instructions for GEOQuery - replace expired URL #18

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
6a86ac5
Replace expired URL
Jul 16, 2024
6066c70
Replace expired URL in .Rmd
Jul 16, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
6 changes: 4 additions & 2 deletions Rmd/GEOquery.Rmd
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -17,8 +17,10 @@ library(GEOquery)
Use the following commands to install these packages in R.

```{r biocLite, eval=FALSE}
source("http://www.bioconductor.org/biocLite.R")
biocLite(c("GEOquery"))
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")

BiocManager::install("GEOquery")
```

## Overview
Expand Down
6 changes: 4 additions & 2 deletions html/GEOquery.html
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -71,8 +71,10 @@ <h2>Dependencies</h2>
<p>This document has the following dependencies:</p>
<pre class="r"><code>library(GEOquery)</code></pre>
<p>Use the following commands to install these packages in R.</p>
<pre class="r"><code>source(&quot;http://www.bioconductor.org/biocLite.R&quot;)
biocLite(c(&quot;GEOquery&quot;))</code></pre>
<pre class="r"><code>if (!require(&quot;BiocManager&quot;, quietly = TRUE))
install.packages(&quot;BiocManager&quot;)

BiocManager::install(&quot;GEOquery&quot;)</code></pre>
</div>
<div id="overview" class="section level2">
<h2>Overview</h2>
Expand Down