C. difficile GWAS paper

Manuscript

Strain Variation in Clostridioides difficile Cytotoxicity Associated with Genomic Variation at Both Pathogenic and Nonpathogenic Loci

Mansucript Authors

Katie Saund, Ali Pirani, Borden Lacy, Phil Hanna, and Evan Snitkin

Repo contents

This repository contains the R code necessary to run hogwash (GWAS) on the bacterial genomes, perform other analyses in the manuscript, and make the final plots.

Questions or bugs?

Please see the manuscript for more details on the methods. Feel free to contact me at katiemsaund@gmail.com or open an issue here on github.