Version 1.74

Version 1.74, 2025-12-08

• Removed includes of R_ext/PrtUtil.h which began causing warnings on CRAN.

Version 1.72

Version 1.72, 2025-11-19

Minor changes

• Improve error message in cim() if multiple pheno.col provided, as well as help file (to emphasize that only a single phenotype can be considered.) (Issue #107)

Version 1.70

Version 1.70, 2024-08-21

Minor changes

• Fixed a typo in the help file for fitqtl().

• Small change to C code in simulate.c for R-devel: change calls to Calloc, Realloc, and Free to R_Calloc, R_Realloc, and R_Free.

• In mqmdatatypes.cpp, changed calls to warning() to calls to Rf_warning() to avoid compile error in R-devel.

• Add Authors@R field in the Description file

Version 1.66

Version 1.66, 2023-11-27

Bug fixes

• Fixed problem in a call to Rprintf() in C++ code, identified by CRAN. (Issue #104.)

• Fixed additional compiler warnings on CRAN (Issue #105).

Version 1.62

Version 1.62, 2023-11-17

Bug fixes

• Fixed bug in summary.scanone() for the case format="onepheno" but threshold has length > 1. (Issue #102.)

• Fixed bug in read.cross() for format "csvs" when the phenotype file contains only the identifiers. (Issue #103.)

Version 1.60

Version 1.60, 2023-04-18

Minor changes

• In the CITATION file, change from citEntry() to bibentry().

Bug fixes

• Fixed bug in addint() and addcovarint(): when X chr QTL and missing phenotypes, would halt with error because cross wasn't getting subset. (Issue #101)

Version 1.58

Version 1.58, 2022-12-22

Minor changes

• In compiled code, replace calls to sprintf() with calls to snprintf(), to avoid warnings on CRAN.

Version 1.54

Version 1.54, 2022-12-01

Minor changes

• locateXO() and countXO() are now working for cross type BCsFt (by treating it as an F2 intercross).

Bug fixes

• Fixed a bug in summary.cross() re & vs &&.

• Fix bug in read.cross.bcsft() so that in read.cross() you can use crosstype="bcsft"

Version 1.52

Version 1.52, 2022-07-09

Minor changes

• checkAlleles() checks that the recombination fractions in the cross object are not only LOD scores (such as from markerlrt()); if they are, it re-runs est.rf().

• In sim.ril(), changed an instance of if(class(x)=="X") to if(inherits(x, "X"))

Version 1.50

Verison 1.50, 2021-10-06

New features

• cim() now includes an addcovar argument for including additional covariates in the model.

Minor changes

• Revised qtlversion() to handle a case like "1.50".

• Added #define USE_FC_LEN_T in C code that calls Fortran, because of a change in R 3.6.5 that's going to be required in R 4.2.0.