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@kr-colab

Kern-Ralph CoLab

Repositories associated with the collaborary research group of Andrew Kern and Peter Ralph

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  1. diploSHIC diploSHIC Public

    feature-based deep learning for the identification of selective sweeps

    Python 59 17

  2. locator locator Public

    deep learning prediction of geographic location from individual genome sequences

    Python 52 16

  3. popvae popvae Public

    genotype dimensionality reduction with a VAE

    Python 48 10

  4. ReLERNN ReLERNN Public

    Recombination Landscape Estimation using Recurrent Neural Networks

    Python 66 13

  5. spaceness spaceness Public

    Space is the Place: Effects of Continuous Spatial Structure on Analysis of Population Genetic Data

    HTML 7 3

Repositories

Showing 10 of 32 repositories
  • popgen-npe Public

    A snakemake workflow for training neural posterior estimators on population genetic data

    kr-colab/popgen-npe’s past year of commit activity
    Jupyter Notebook 4 MIT 1 1 1 Updated Mar 20, 2026
  • discoal Public

    discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes including population splits, admixture events, and ancient samples

    kr-colab/discoal’s past year of commit activity
    TeX 49 GPL-3.0 10 2 1 Updated Mar 20, 2026
  • Ecolocator-paper Public
    kr-colab/Ecolocator-paper’s past year of commit activity
    TeX 0 0 0 0 Updated Mar 18, 2026
  • mkado Public

    A McDonald-Kreitman test implementation

    kr-colab/mkado’s past year of commit activity
    Python 9 MIT 1 0 0 Updated Mar 17, 2026
  • cxt Public

    Coalescence X Translation

    kr-colab/cxt’s past year of commit activity
    TeX 3 MIT 0 1 0 Updated Mar 13, 2026
  • illex Public

    Illex paper

    kr-colab/illex’s past year of commit activity
    TeX 0 0 0 1 Updated Mar 13, 2026
  • ReLocator Public

    modular API for genetic geolocation using deep neural networks (i.e. version 2 of locator)

    kr-colab/ReLocator’s past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated Mar 2, 2026
  • diploSHIC Public

    feature-based deep learning for the identification of selective sweeps

    kr-colab/diploSHIC’s past year of commit activity
    Python 59 MIT 17 1 1 Updated Feb 7, 2026
  • ReLERNN Public

    Recombination Landscape Estimation using Recurrent Neural Networks

    kr-colab/ReLERNN’s past year of commit activity
    Python 66 MIT 13 2 0 Updated Nov 30, 2025
  • disperseNN2 Public

    estimating dispersal distance from georeferenced polymorphisms

    kr-colab/disperseNN2’s past year of commit activity
    Python 4 MIT 3 7 0 Updated Aug 17, 2025
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