This repository contains scripts and related files for computing and processing similarity metrics, for both taxonomic anf functional data within the CCMRI framework.
The scripts in this repository are used for:
- Filtering taxonomic & functional tables to a desired depth (e.g., genus level, frequency thresholds).
- Applying abundance and diversity thresholds to remove low-quality data.
- Preparing cleaned tables for downstream similarity metric calculations.
- Downsampling noise injection via multinomial distribution to check metrics robustness.
- Python 3.5+