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Spatial analysis of the prostate TME

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Data Access Information


TABLE OF CONTENTS

  • GENERAL INFORMATION
    • ASSOCIATED PUBLICATION
    • RECOMMENDED CITATION
    • USEFUL LINKS
  • ACCESS THE DATASET
    • FILE ORGANIZATION
    • REPOSITORY LINKS
    • FILE LIST
  • ADDITIONAL NOTES/COMMENTS ​

GENERAL INFORMATION

  1. Publication or Dataset title: Spatially organized lymphocytic microenvironments in high grade primary prostate tumors ​

  2. Authors: Ali Amiryousefi, Jeremiah Wala, Jia-Ren Lin, Brian William Labadie, Aishwarya Atmakuri, Eamon Toye, Kiranj Chaudagar, Madeleine S. Torcasso, Shannon Coy, Giuseppe Nicolo Fanelli, Brigette Kobs, Fabio Socciarelli, Andreanne Gagne, Eliezer M. Van Allen, Akash Patnaik, and Peter Sorger ​

  3. Please cite this data as the following
    Peter Sorger, Ali Amiryousefi. (2025). PCa (V.1) []. Location: Laboratory of Systems Phramacology @ SysBio, HMS.

  4. Relevant links: XX

  1. Licenses/restrictions placed on the data: CC-BY creativecommons.org/licenses/by/4.0/

ACCESS THE DATASET

The data will be uplaoded to Zenodo with permanent DOI upon acceptance of the manuscript.

File organization:

Each file follows the following naming convention:
​ Each file corresponds to each extended and main figure produced in the mansucript.

File Type Description Location
Fig-x.rmd Rmarkdown file for producing the respective panels of the extended and main figures GitHub

AWS Data Access

​ The images and the souce data will be deposited and accessiable through AWS serveres upon acceptance of the manuscript. ​ You will need the following bucket name:

TBA

Synapse Library

​ TBA synapse.org/MY-PUBLIC-SYNAPSE-LIBRARY

Other Repository

TBA ​


ADDITIONAL NOTES/COMMENTS

​ Please let (Ali Amiryousefi, [email protected]) know if any errors are found in this data.

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