feat: fully integrate external knowledge base metadata into workflow

[yuqichou]

Summary

store complete deduplicated metadata in extras field.

Screenshots

Checklist

Important

Please review the checklist below before submitting your pull request.

• This change requires a documentation update, included: Dify Document
• I understand that this PR may be closed in case there was no previous discussion or issues. (This doesn't apply to typos!)
• I've added a test for each change that was introduced, and I tried as much as possible to make a single atomic change.
• I've updated the documentation accordingly.
• I ran dev/reformat(backend) and cd web && npx lint-staged(frontend) to appease the lint gods

[crazywoola]

Please open an issue before submit the PR, and describe a little bit about the PR's purpose.