fix unknown track error in line665: rmsk --> RepeatMasker #108
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This function demonstration wants to get the RepeatMasker table from UCSC. Thus the track needs to be RepeatMasker instead of rmsk. Otherwise, it will get an unkown track error: Error in h(simpleError(msg, call)) : error in evaluating the argument 'object' in selecting a method for function 'getTable': error in evaluating the argument 'table' in selecting a method for function '%in%': Unknown track: rmsk
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
I am happy to see there is a demonstration of usage to get the RepeatMakser track in rtracklayer, since I am very interested in this field. I just found an unknown track error. Please consider accepting this change in the tutorial. Thanks a lot!
Details:
This function demonstration wants to get the RepeatMasker table from UCSC. Thus, the track needs to be RepeatMasker instead of rmsk. Otherwise, it will get an unknown track error in R:
Error in h(simpleError(msg, call)) :
error in evaluating the argument 'object' in selecting a method for function 'getTable': error in evaluating the argument 'table' in selecting a method for function '%in%': Unknown track: rmsk