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"Splitting" the data

Status: Open.

#273 In lgmgeo/AnnotSV;

· JesperHJespersen opened on Feb 28, 2025

incmpl and cml Gene_name

Status: Open.

#271 In lgmgeo/AnnotSV;

· faragrou opened on Feb 25, 2025

total percentage overlap po_P*

new annotation requested

Status: Open.

#269 In lgmgeo/AnnotSV;

· NinaGerrekens opened on Feb 3, 2025

Issue with Exomiser Run

HPOExomiser / PhenoGeniusExomiser / PhenoGenius

Status: Open.

#263 In lgmgeo/AnnotSV;

· poddarharsh15 opened on Nov 11, 2024

Invalid VCF according to VCF specification

VariantConvert

vcf output

Status: Open.

#261 In lgmgeo/AnnotSV;

· aligogon opened on Oct 9, 2024

AnnotSV BioConda Environment: Reference Issues For GRCh38

bugSomething isn't workingSomething isn't working

Docker/Singularity/Bioconda

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#255 In lgmgeo/AnnotSV;

· yr542 opened on Sep 6, 2024

issue with annotation of input vcf file

bugSomething isn't workingSomething isn't working

Status: Open.

#254 In lgmgeo/AnnotSV;

· dasn588 opened on Sep 6, 2024

AnnotSV passing wrong arguments to variant convert

bugSomething isn't workingSomething isn't working

Docker/Singularity/Bioconda

Status: Open.

#246 In lgmgeo/AnnotSV;

· GACGAMA opened on Jul 10, 2024

vcf errors

bugSomething isn't workingSomething isn't working

VariantConvert

Status: Open.

#245 In lgmgeo/AnnotSV;

· gevro opened on Jul 10, 2024

custom bed annotation. overlap within n bases

Status: Open.

#240 In lgmgeo/AnnotSV;

· blaverty opened on Jun 28, 2024

New long-read population reference

new annotation requested

Status: Open.

#237 In lgmgeo/AnnotSV;

· gevro opened on Jun 11, 2024

Unusual large memory needed for very large sized coupled BNDs

bugSomething isn't workingSomething isn't working

help wantedExtra attention is neededExtra attention is needed

square-bracketed SV notationRelies on the variant-extractor tool (Rodrigo Martín), https://github.com/EUCANCan/variant-extractorRelies on the variant-extractor tool (Rodrigo Martín), https://github.com/EUCANCan/variant-extractor

Status: Open.

#232 In lgmgeo/AnnotSV;

· jamigo opened on Apr 26, 2024