Search results

Running 2 or more instances of bwa mem bricks the server

Status: Open.

#444 In lh3/bwa;

· mf116 opened on Apr 10, 2025

Fail to read header from fasta input

Data needed

Status: Open.

#409 In lh3/bwa;

· gustavogregoracci opened on Dec 6, 2023

bwa mem hangs after a few thousand reads

Data needed

Status: Open.

#407 In lh3/bwa;

· chklee30 opened on Nov 29, 2023

Reads with mapq=0 not mapped to the same location as their mates

Status: Open.

#405 In lh3/bwa;

· pinbo opened on Nov 3, 2023

Output reads not paired with a mixture of single end and paired end reads when using smart-pairing

Bug

Status: Open.

#403 In lh3/bwa;

· nh13 opened on Oct 6, 2023

Is this an wrong alignment score in bwa-mem alignment?

Status: Open.

#398 In lh3/bwa;

· huichanghuang opened on Aug 15, 2023

bwa mem failed to locate index files

Status: Open.

#386 In lh3/bwa;

· isabelluo opened on Feb 8, 2023

bwa mem -a and -t options are incompatible?

Status: Open.

#382 In lh3/bwa;

· yazhinia opened on Jan 3, 2023

mapping on subset of a bigger reference gives different results

Data needed

Status: Open.

#381 In lh3/bwa;

· mewu3 opened on Jan 3, 2023

Adding chm13 option in bwakit

Status: Open.

#364 In lh3/bwa;

· mikecuoco opened on Aug 5, 2022

T2T-CHM13 index file not recognized

Status: Open.

#363 In lh3/bwa;

· abbeythorpe opened on Aug 2, 2022

Different alignment numbers to same reference sequence

Data needed

Status: Open.

#360 In lh3/bwa;

· stewalsh04 opened on Jul 5, 2022