Skip to content
Navigation Menu
Sign in
Appearance settings
Platform
AI CODE CREATION
GitHub Copilot
Write better code with AI
GitHub Copilot app
Direct agents from issue to merge
MCP Registry
Integrate external tools
DEVELOPER WORKFLOWS
Actions
Automate any workflow
Codespaces
Instant dev environments
Issues
Plan and track work
Code Review
Manage code changes
Code Quality
Enforce quality at merge
APPLICATION SECURITY
GitHub Advanced Security
Find and fix vulnerabilities
Code security
Secure your code as you build
Secret protection
Stop leaks before they start
EXPLORE
Why GitHub
Documentation
Blog
Changelog
Marketplace
View all features
Solutions
BY COMPANY SIZE
Enterprises
Small and medium teams
Startups
Nonprofits
BY USE CASE
App Modernization
DevSecOps
DevOps
CI/CD
View all use cases
BY INDUSTRY
Healthcare
Financial services
Manufacturing
Government
View all industries
View all solutions
Resources
EXPLORE BY TOPIC
AI
Software Development
DevOps
Security
View all topics
EXPLORE BY TYPE
Customer stories
Events & webinars
Ebooks & reports
Business insights
GitHub Skills
SUPPORT & SERVICES
Documentation
Customer support
Community forum
Trust center
Partners
View all resources
Open Source
COMMUNITY
GitHub Sponsors
Fund open source developers
PROGRAMS
Security Lab
Maintainer Community
GitHub Stars
Archive Program
REPOSITORIES
Topics
Trending
Collections
Enterprise
ENTERPRISE SOLUTIONS
Enterprise platform
AI-powered developer platform
AVAILABLE ADD-ONS
GitHub Advanced Security
Enterprise-grade security features
Copilot for Business
Enterprise-grade AI features
Premium Support
Enterprise-grade 24/7 support
Pricing
Search
/
Sign in
Sign up
Appearance settings
You signed in with another tab or window.
Reload
to refresh your session.
You signed out in another tab or window.
Reload
to refresh your session.
You switched accounts on another tab or window.
Reload
to refresh your session.
Dismiss alert
{{ message }}
Uh oh!
There was an error while loading.
Please reload this page
.
li-lab-mcgill
/
scTimeBench
Public
Notifications
You must be signed in to change notification settings
Fork
3
Star
7
Code
Issues
23
Pull requests
0
Actions
Projects
Security and quality
0
Insights
Additional navigation options
Code
Issues
Pull requests
Actions
Projects
Security and quality
Insights
[feat] Add gene expression and cell types over time
- #132
#132
Merged
ehuan2
merged 10 commits into
li-lab-mcgill:main
li-lab-mcgill/scTimeBench:main
from
ehuan2:eric/meta-metric
ehuan2/scTimeBench:eric/meta-metric
Copy head branch name to clipboard
Jun 18, 2026
Conversation
Commits
10
(10)
Checks
Files changed
Merged
[feat] Add gene expression and cell types over time
#132
ehuan2
merged 10 commits into
li-lab-mcgill:main
li-lab-mcgill/scTimeBench:main
from
ehuan2:eric/meta-metric
ehuan2/scTimeBench:eric/meta-metric
Copy head branch name to clipboard
Commits
Commits on Jun 12, 2026
[fix] Move gene_col_name to outside the perturbations
ehuan2
committed
a2e5311
View commit details
Copy full SHA for a2e5311
Browse repository at this point
[fix] Reorganized perturbation (generator pattern) for future
Show description for 554029d
ehuan2
committed
554029d
View commit details
Copy full SHA for 554029d
Browse repository at this point
Commits on Jun 13, 2026
[fix] Fix graph viz with OT-CFM for setup later
Show description for 8034895
ehuan2
committed
8034895
View commit details
Copy full SHA for 8034895
Browse repository at this point
[feat] Add in plotting of cell types across time
Show description for 1abacec
ehuan2
committed
1abacec
View commit details
Copy full SHA for 1abacec
Browse repository at this point
[feat] Add in random baseline to the plot
ehuan2
committed
dd3a717
View commit details
Copy full SHA for dd3a717
Browse repository at this point
[feat] Add in gene measurements over time
ehuan2
committed
784b7f1
View commit details
Copy full SHA for 784b7f1
Browse repository at this point
[fix] Redo perturbation hierarchy for ease of use
Show description for 97be6f7
ehuan2
committed
97be6f7
View commit details
Copy full SHA for 97be6f7
Browse repository at this point
Commits on Jun 14, 2026
[feat] Add in plotting of gene expression over time
ehuan2
committed
30174fd
View commit details
Copy full SHA for 30174fd
Browse repository at this point
Commits on Jun 17, 2026
[feat] Add in max and min measures of gene expression
Show description for 9aba479
ehuan2
committed
9aba479
View commit details
Copy full SHA for 9aba479
Browse repository at this point
[feat] Add in global perturbation to apply to data
Show description for f0cdff0
ehuan2
committed
f0cdff0
View commit details
Copy full SHA for f0cdff0
Browse repository at this point
You can’t perform that action at this time.