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Pull requests: loculus-project/loculus

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Pull requests list

Bulk submission cleanup backend related to the loculus backend component
#7012 opened Jul 30, 2026 by anna-parker Contributor • Draft
3 tasks
1
docs: add security policy
#7011 opened Jul 30, 2026 by snehasaisneha Member Loading…
1
@snehasaisneha
13
chore(deps): bump react-dom and @types/react-dom in /website dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#7010 opened Jul 29, 2026 by dependabot Bot Loading…
chore(deps-dev): bump the minorandpatch group in /integration-tests with 3 updates dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#7007 opened Jul 29, 2026 by dependabot Bot Loading…
chore(deps): bump postcss from 8.5.16 to 8.5.24 in /keycloak/keycloakify dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#7004 opened Jul 29, 2026 by dependabot Bot Loading…
chore(deps): bump brace-expansion from 2.1.2 to 2.1.3 in /keycloak/keycloakify dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#7002 opened Jul 29, 2026 by dependabot Bot Loading…
feat(file-processing): prevent submission of interleaved fastq files backend related to the loculus backend component deployment Code changes targetting the deployment infrastructure preprocessing Issues related to the preprocessing component website Tasks related to the web application
#7001 opened Jul 28, 2026 by anna-parker Contributor • Draft
3 tasks
1
fix(auth): harden OIDC login flow and redirect handling deployment Code changes targetting the deployment infrastructure preview Triggers a deployment to argocd website Tasks related to the web application
#6994 opened Jul 27, 2026 by snehasaisneha Member Loading…
@snehasaisneha
5
feat(deposition): use foreign key constraints and use ORM with transactions and joins in more places deposition related to ENA/INSDC deposition
#6989 opened Jul 26, 2026 by anna-parker Contributor • Draft
3 tasks
1
feat!(config, prepro, file-processing): create new file-processing microservice which handles file validation deployment Code changes targetting the deployment infrastructure preprocessing Issues related to the preprocessing component preview Triggers a deployment to argocd
#6987 opened Jul 25, 2026 by anna-parker Contributor Loading…
3 tasks done
2
19
fix(backend): display preprint servers in citations backend related to the loculus backend component
#6982 opened Jul 24, 2026 by theosanderson Member • Draft
1
7
feat(ingest): enrich mirrored GenBank metadata
#6981 opened Jul 24, 2026 by theosanderson Member • Draft
12
feat(prepro): refactor - split args into function args and entry-specific level, internally supplied context arguments which are now fully typed preprocessing Issues related to the preprocessing component
#6980 opened Jul 24, 2026 by anna-parker Contributor Loading…
3 tasks
12
chore(backend): Upgrade spring boot from v3.5 to v4, exposed from v0.61 to v1 backend related to the loculus backend component
#6974 opened Jul 23, 2026 by tombch Collaborator • Draft
3 tasks
4
feat(website): revise defaults to single-sequence form (bulk-first tabs, Preview tag) preview Triggers a deployment to argocd
#6973 opened Jul 23, 2026 by theosanderson-agent Collaborator • Draft
3
feat(website): default revision to the single sequence form preview Triggers a deployment to argocd website Tasks related to the web application
#6964 opened Jul 22, 2026 by theosanderson-agent Collaborator Loading…
14
chore(deps-dev): bump eslint-plugin-astro from 1.7.0 to 3.0.1 in /website dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6961 opened Jul 22, 2026 by dependabot Bot Loading…
chore(deps): bump react-dom and @types/react-dom in /keycloak/keycloakify dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6959 opened Jul 22, 2026 by dependabot Bot Loading…
chore(deps): bump the minorandpatch group in /keycloak/keycloakify with 10 updates dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6958 opened Jul 22, 2026 by dependabot Bot Loading…
chore(deps): bump types-psycopg2 from 2.9.21.20251012 to 2.9.21.20260712 in /ena-submission conda Pull requests that update conda code dependencies Pull requests that update a dependency file
#6952 opened Jul 22, 2026 by dependabot Bot Loading…
chore(deps): bump the minorandpatch group in /ena-submission with 17 updates conda Pull requests that update conda code dependencies Pull requests that update a dependency file
#6951 opened Jul 22, 2026 by dependabot Bot Loading…
chore(deps): bump the minorandpatch group across 1 directory with 3 updates conda Pull requests that update conda code dependencies Pull requests that update a dependency file
#6950 opened Jul 22, 2026 by dependabot Bot Loading…
feat(website): add a "Modify entries" menu and fix the search action row layout website Tasks related to the web application
#6938 opened Jul 21, 2026 by theosanderson-agent Collaborator • Draft
2 of 3 tasks
1
fix(backend): spool released exports safely backend related to the loculus backend component bug Something isn't working deployment Code changes targetting the deployment infrastructure performance preview Triggers a deployment to argocd
#6926 opened Jul 20, 2026 by clonder Contributor Loading…
1
@clonder
3
feat!(website, backend): Update bulk file submission/revision format to use metadata file backend related to the loculus backend component preview Triggers a deployment to argocd website Tasks related to the web application
#6922 opened Jul 17, 2026 by tombch Collaborator Loading…
3 tasks
1
16
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