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Phase B3b — zero-copy persisted FM-index
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May 27, 2026
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Phase B3b — zero-copy persisted FM-index
#16
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docs(spec): Phase B3b — zero-copy persisted FM-index design
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docs(plan): Phase B3b — zero-copy persisted FM-index implementation plan
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feat(genomics/fm_backing): BwtBacking trait + generic FM operations
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refactor(genomics/fm_index): route BlockedFMIndex through BwtBacking
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feat(genomics): pub(crate) serialization accessors + shared rank primitives
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feat(genomics/index/format): extend SectionKind for the FM-index sections
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feat(genomics/index/io): deterministic GenomeIndex serializer
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feat(genomics/index/io): IndexReader::open parses the FM-index sections
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feat(genomics/index/view): zero-copy FmIndexView + GenomeIndexView + equivalence gate
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harden(genomics/index/view): validate block records + rate consistency
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test(index): B3b persistence gates + docs/index-format.md
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harden(genomics/index): reject non-8-aligned block offsets at open
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