Phase B4: bounded whole-genome `variants --index` over the persisted index - #19

Merged

logannye merged 7 commits into

mainfrom

rosalind/phase-b4-variants-index

May 28, 2026

Commits on May 28, 2026

docs(spec): Phase B4 — bounded whole-genome variant calling over the persisted index

logannye
and
claude
committed
01355ae
docs(plan): Phase B4 — bounded whole-genome variant calling over the persisted index

logannye
and
claude
committed
c7c89d1
feat(io/bam): StreamingBamSource — bounded, sort-guarded BAM read source

logannye
and
claude
committed
8223187
feat(call): bounded whole-genome germline drive over a sorted stream + ReferenceView

logannye
and
claude
committed
1659f25
feat(cli): variants --index — bounded multi-contig calling over the persisted index

logannye
and
claude
committed
324d489
style(call): rustfmt reflow of the whole_genome working-set assertion

logannye
and
claude
committed
38c6518
feat(cli): variants --index memory receipt + record-only --memory-budget-mb

logannye
and
claude
committed
6d1f0b1