Development: Optimize Docker build times and image sizes#448
Development: Optimize Docker build times and image sizes#448wasnertobias wants to merge 2 commits intomainfrom
Development: Optimize Docker build times and image sizes#448Conversation
- Switch all Athena Dockerfiles from python:3.11 (~900MB) to python:3.11-slim (~150MB) - Add multi-stage builds to all Athena module Dockerfiles (12 images): builder stage installs deps with Poetry; runtime stage copies only the venv - Add multi-stage builds to nebula FAQ and transcriber Dockerfiles - Switch iris/Dockerfile from Poetry to uv (10-100x faster dep resolution) with multi-stage build pattern matching logos/Dockerfile - Add comprehensive .dockerignore files to all Athena modules (new or updated) - Add BuildKit per-Dockerfile .dockerignore for iris and nebula services (using Dockerfile.dockerignore pattern since context is monorepo root) - Remove Poetry, compilers, and dev tools from all production runtime images - Use exec-form CMD (JSON array) instead of shell-form for proper signal handling - Preserve COPY --from=athena and COPY --from=llm_core cross-image dependency chain Expected impact: - ~600MB+ reduction per Athena module image (18 images) - Faster builds via uv, better layer caching, smaller build contexts - Improved security: no gcc/build-essential/Poetry in production images
📝 WalkthroughWalkthroughThe pull request refactors Docker builds across the monorepo to use multi-stage builds, moving dependency installation to a builder stage. Additionally, Changes
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Estimated code review effort🎯 3 (Moderate) | ⏱️ ~25 minutes 🚥 Pre-merge checks | ✅ 3✅ Passed checks (3 passed)
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Pull request overview
Optimizes Docker build performance and runtime image sizes across the monorepo by introducing multi-stage builds, slimmer base images, improved ignore rules, and switching Iris to uv-based dependency installation.
Changes:
- Converted multiple Python services/modules to multi-stage Docker builds with slim runtime stages and exec-form
CMD. - Added service-specific
.dockerignore/Dockerfile.dockerignorefiles to shrink build contexts. - Migrated
irisDocker build from Poetry to uv with BuildKit cache mounts.
Reviewed changes
Copilot reviewed 30 out of 30 changed files in this pull request and generated 6 comments.
Show a summary per file
| File | Description |
|---|---|
| nebula/docker/transcriber/Dockerfile.dockerignore | Limits monorepo-root build context to transcriber-relevant paths |
| nebula/docker/transcriber/Dockerfile | Multi-stage build; runs uvicorn from venv without Poetry at runtime |
| nebula/docker/faq/Dockerfile.dockerignore | Limits monorepo-root build context to faq-relevant paths |
| nebula/docker/faq/Dockerfile | Multi-stage build; runs uvicorn from venv without Poetry at runtime |
| iris/Dockerfile.dockerignore | Limits monorepo-root build context to Iris-relevant paths |
| iris/Dockerfile | Multi-stage build using uv to speed dependency installation |
| athena/modules/text/module_text_llm/Dockerfile | Multi-stage build; slim runtime; venv-only copy |
| athena/modules/text/module_text_llm/.dockerignore | Broader ignores to reduce build context size |
| athena/modules/text/module_text_cofee/Dockerfile | Expanded to 3 stages (protobuf + deps builder + runtime) |
| athena/modules/text/module_text_cofee/.dockerignore | Broader ignores; keeps protobuf dir out of context |
| athena/modules/programming/module_programming_winnowing/Dockerfile | Multi-stage build; slim runtime; venv-only copy |
| athena/modules/programming/module_programming_winnowing/.dockerignore | Broader ignores to reduce build context size |
| athena/modules/programming/module_programming_themisml/Dockerfile | Multi-stage build; slim runtime; venv-only copy |
| athena/modules/programming/module_programming_themisml/.dockerignore | Broader ignores to reduce build context size |
| athena/modules/programming/module_programming_llm/Dockerfile | Multi-stage build; slim runtime; venv-only copy |
| athena/modules/programming/module_programming_llm/.dockerignore | Broader ignores to reduce build context size |
| athena/modules/programming/module_programming_apted/Dockerfile | Multi-stage build; slim runtime; venv-only copy |
| athena/modules/programming/module_programming_apted/.dockerignore | Broader ignores to reduce build context size |
| athena/modules/programming/module_example/Dockerfile | Multi-stage build; slim runtime; venv-only copy |
| athena/modules/programming/module_example/.dockerignore | Broader ignores to reduce build context size |
| athena/modules/modeling/module_modeling_llm/Dockerfile | Multi-stage build; slim runtime; venv-only copy |
| athena/modules/modeling/module_modeling_llm/.dockerignore | Broader ignores to reduce build context size |
| athena/log_viewer/Dockerfile | Multi-stage build; slim runtime; venv-only copy |
| athena/log_viewer/.dockerignore | Broader ignores to reduce build context size |
| athena/llm_core/Dockerfile | Switches llm_core base to slim and adds build deps for C extensions |
| athena/llm_core/.dockerignore | Adds comprehensive ignores to reduce build context size |
| athena/athena/Dockerfile | Switches athena base to slim and adds build deps for C extensions |
| athena/athena/.dockerignore | Adds comprehensive ignores to reduce build context size |
| athena/assessment_module_manager/Dockerfile | Multi-stage build; slim runtime; venv-only copy |
| athena/assessment_module_manager/.dockerignore | Broader ignores to reduce build context size |
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| # Copy only the virtual environment from the builder | ||
| COPY --from=builder /code/.venv /code/.venv | ||
| # Copy the generated protobuf file | ||
| COPY --from=builder /code/module_text_cofee/protobuf/ /code/module_text_cofee/protobuf/ |
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cofee.protois generated in thecofee_protobufstage, but the runtime stage copies protobuf artifacts frombuilder. As shown, builderdoesn't appear to be the stage producing those protobuf outputs, so this copy is likely to be missing/empty or fail depending on how the rest of the Dockerfile is structured. Copy the generated protobuf outputs from thecofee_protobufstage (or ensure the builder stage explicitly imports them fromcofee_protobuf` before the final runtime copy).
| # Copy only the virtual environment from the builder | |
| COPY --from=builder /code/.venv /code/.venv | |
| # Copy the generated protobuf file | |
| COPY --from=builder /code/module_text_cofee/protobuf/ /code/module_text_cofee/protobuf/ | |
| # Ensure protobuf destination directory exists | |
| RUN mkdir -p /code/module_text_cofee/protobuf | |
| # Copy only the virtual environment from the builder | |
| COPY --from=builder /code/.venv /code/.venv | |
| # Copy the generated protobuf file directly from the cofee_protobuf stage | |
| COPY --from=cofee_protobuf /proto/cofee_pb2.py /code/module_text_cofee/protobuf/ |
| # Runtime system dependencies (ffmpeg, tesseract, OpenCV libs) | ||
| RUN apt-get update && apt-get install -y --no-install-recommends \ | ||
| ffmpeg \ | ||
| tesseract-ocr \ | ||
| libgl1 \ |
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The runtime apt-get install layer doesn’t remove /var/lib/apt/lists/*, which increases final image size and can reduce build cache efficiency. Add cleanup to the same RUN instruction (similar to the Athena Dockerfiles in this PR).
| RUN pip install --no-cache-dir poetry \ | ||
| && poetry config virtualenvs.create true \ | ||
| && poetry config virtualenvs.in-project true \ | ||
| && poetry install --only main --no-root \ | ||
| && pip uninstall -y poetry |
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pip install ... poetry is unpinned, which makes builds less reproducible and can introduce unexpected breakages when Poetry releases. Pin Poetry to a specific version (preferably aligned with the repo’s other Dockerfiles, which already pin Poetry in several places).
| RUN pip install --no-cache-dir poetry \ | ||
| && poetry config virtualenvs.create true \ | ||
| && poetry config virtualenvs.in-project true \ | ||
| && poetry install --only main --no-root \ | ||
| && pip uninstall -y poetry |
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Same as FAQ: Poetry is installed without a version pin, reducing reproducibility of the container build. Pin Poetry to a specific version to avoid surprise upgrades.
| # Copy dependency metadata first (for layer caching) | ||
| COPY iris/pyproject.toml iris/poetry.lock ./ | ||
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||
| # Copy memiris (path dependency required for resolution) |
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COPY memiris ../memiris places the dependency at /memiris (outside WORKDIR /app), which is surprising and makes the image layout harder to reason about. Prefer copying into a path under /app (e.g., /app/memiris) and updating the path dependency accordingly, or otherwise document why /memiris is intentional.
| # Copy memiris (path dependency required for resolution) | |
| # Copy memiris (path dependency required for resolution). | |
| # Note: pyproject.toml expects memiris at ../memiris relative to /app, | |
| # so we intentionally place it at /memiris (outside WORKDIR /app). |
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| # Stage 2: Runtime — slim image without compilers or dev tools | ||
| FROM python:3.11-slim | ||
| LABEL org.opencontainers.image.source=https://github.com/pal03377/Athena-New |
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The org.opencontainers.image.source label differs from the other Athena images in this PR (which point to https://github.com/ls1intum/Athena). If this module belongs to the main repo, update the label to the canonical source URL to keep image provenance consistent.
| LABEL org.opencontainers.image.source=https://github.com/pal03377/Athena-New | |
| LABEL org.opencontainers.image.source=https://github.com/ls1intum/Athena |
![coderabbitai[bot]](https://avatars.githubusercontent.com/in/347564?s=60&v=4){kind=small}
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Actionable comments posted: 7
Caution
Some comments are outside the diff and can’t be posted inline due to platform limitations.
⚠️ Outside diff range comments (1)
iris/Dockerfile (1)
30-48:⚠️ Potential issue | 🟠 MajorRun the runtime stage as a non-root user.
The runtime stage (lines 30-48) has no
USERdirective, so the container runs as root. This weakens runtime isolation and contradicts Docker security best practices.🛡️ Minimal non-root runtime patch
FROM python:3.12.3-slim ENV PYTHONUNBUFFERED=1 WORKDIR /app +RUN addgroup --system app && adduser --system --ingroup app app # Copy only the virtual environment from the builder -COPY --from=builder /app/.venv /app/.venv +COPY --from=builder --chown=app:app /app/.venv /app/.venv ENV VIRTUAL_ENV=/app/.venv PATH="/app/.venv/bin:$PATH" # Copy the content of the local src directory to the working directory -COPY iris/src/iris ./iris +COPY --chown=app:app iris/src/iris ./iris # Copy logging configuration -COPY iris/log_conf.yml ./log_conf.yml +COPY --chown=app:app iris/log_conf.yml ./log_conf.yml +USER app🤖 Prompt for AI Agents
Verify each finding against the current code and only fix it if needed. In `@iris/Dockerfile` around lines 30 - 48, The Dockerfile runtime stage runs as root; create a non-root user and switch to it: add steps to create a user/group (e.g., appuser), chown the WORKDIR and the copied VIRTUAL_ENV (/app and /app/.venv) to that user, and add a USER directive before the CMD so uvicorn (iris.main:app) runs unprivileged; reference the existing WORKDIR /app, COPY --from=builder /app/.venv, ENV VIRTUAL_ENV, and CMD ["uvicorn", "iris.main:app", ...] when applying the changes.
🧹 Nitpick comments (10)
athena/modules/programming/module_programming_winnowing/Dockerfile (1)
22-24: Consider excluding dev dependencies to further reduce image size.Since this is a production runtime image, dev dependencies (test frameworks, linters, type checkers, etc.) are unnecessary. Adding
--only mainwill exclude them from the venv that gets copied to the runtime stage.♻️ Proposed fix
RUN poetry config virtualenvs.create true \ && poetry config virtualenvs.in-project true \ - && poetry install --no-interaction --no-ansi + && poetry install --only main --no-interaction --no-ansi🤖 Prompt for AI Agents
Verify each finding against the current code and only fix it if needed. In `@athena/modules/programming/module_programming_winnowing/Dockerfile` around lines 22 - 24, Update the Dockerfile RUN step that calls poetry install (the RUN line containing "poetry install --no-interaction --no-ansi") to exclude development dependencies by adding the appropriate flag (e.g., --only main) so the created virtualenv contains only production deps; edit the RUN command that configures poetry and runs "poetry install" to append the flag and rebuild the image to reduce runtime image size.athena/modules/programming/module_programming_themisml/Dockerfile (1)
9-11: Minor:gccis redundant whenbuild-essentialis installed.The
build-essentialmeta-package already includesgcc, so listing it separately is unnecessary.🔧 Suggested fix
RUN apt-get update && apt-get install -y --no-install-recommends \ - build-essential gcc libpq-dev \ + build-essential libpq-dev \ && rm -rf /var/lib/apt/lists/*🤖 Prompt for AI Agents
Verify each finding against the current code and only fix it if needed. In `@athena/modules/programming/module_programming_themisml/Dockerfile` around lines 9 - 11, In the Dockerfile RUN line that installs packages (the command containing "apt-get update && apt-get install -y --no-install-recommends \ build-essential gcc libpq-dev \ && rm -rf /var/lib/apt/lists/*"), remove the redundant "gcc" package from the install list because it is provided by "build-essential"; leave "build-essential" and "libpq-dev" and keep the existing cleanup (rm -rf) unchanged.nebula/docker/faq/Dockerfile (1)
1-35: Well-structured multi-stage build.The builder/runtime separation is clean: dependencies are installed in an in-project venv, poetry is removed after use, and only the venv is carried forward to the slim runtime image.
Consider adding a non-root user for defense-in-depth.
Running as root inside the container increases the blast radius if the application is compromised. Adding a dedicated user is a recommended hardening measure, though it may already be handled by your orchestration layer (e.g., Kubernetes
securityContext).🔒 Optional: Add non-root user
# Copy only the virtual environment from the builder COPY --from=builder /app/.venv /app/.venv ENV PATH="/app/.venv/bin:$PATH" # Copy source code and config COPY nebula/src/nebula ./nebula +# Run as non-root user +RUN useradd --create-home appuser +USER appuser + # Set PYTHONPATH for relative imports ENV PYTHONPATH=/app🤖 Prompt for AI Agents
Verify each finding against the current code and only fix it if needed. In `@nebula/docker/faq/Dockerfile` around lines 1 - 35, The Dockerfile currently runs the image as root; add a non-root user and ensure /app is owned by that user before switching to it to harden runtime. In the Dockerfile (builder/runtime stages), create a dedicated user/group (e.g., appuser/appgroup), chown the application files and the copied virtualenv at /app to that uid/gid, and add a USER instruction so the final runtime executes uvicorn as that non-root user instead of root.nebula/docker/transcriber/Dockerfile (1)
1-46: Clean multi-stage build with appropriate runtime dependencies.The separation is well done: build tools stay in the builder stage while only
ffmpeg,tesseract-ocr, and OpenCV runtime libraries are installed in the final image. The exec-form CMD is correct.Same recommendation as the FAQ service: consider adding a non-root user for defense-in-depth if not already handled by your orchestration layer.
,
🤖 Prompt for AI Agents
Verify each finding against the current code and only fix it if needed. In `@nebula/docker/transcriber/Dockerfile` around lines 1 - 46, Add a non-root runtime user to the final image to improve container security: create a user/group (e.g., "nebula"), chown /app and any runtime dirs to that user after copying the venv and source (refer to the COPY --from=builder /app/.venv /app/.venv, COPY nebula/src/nebula ./nebula and WORKDIR /app lines), then switch to that user with USER before the EXPOSE/CMD lines so uvicorn (nebula.transcript.app:app) runs unprivileged; ensure PATH and PYTHONPATH remain correct for the in-project venv.athena/modules/text/module_text_cofee/Dockerfile (2)
31-34: Consider adding--no-roottopoetry install.At this point in the build, only
pyproject.tomlandpoetry.lockare present—the module source code hasn't been copied yet. If the project is defined as an installable package,poetry installwill attempt to install the root package, which could fail or produce unexpected behavior.Adding
--no-rootensures only dependencies are installed in the builder stage, which is the intended caching pattern.♻️ Proposed fix
RUN poetry config virtualenvs.create true \ && poetry config virtualenvs.in-project true \ - && poetry install --no-interaction --no-ansi + && poetry install --no-interaction --no-ansi --no-root🤖 Prompt for AI Agents
Verify each finding against the current code and only fix it if needed. In `@athena/modules/text/module_text_cofee/Dockerfile` around lines 31 - 34, The RUN line that runs Poetry should install only dependencies in the build stage; update the command that currently calls "poetry install --no-interaction --no-ansi" to include the --no-root flag so Poetry does not try to install the project itself (i.e., change the RUN block containing the poetry config lines to run "poetry install --no-root --no-interaction --no-ansi").
48-55: Reorder COPY to ensure generated protobuf takes precedence.Currently,
COPY . ./(line 55) runs after copying the generated protobuf (line 51). Ifcofee_pb2.pyexists in the build context (accidentally committed or left from local generation), it would overwrite the freshly-generated version from Stage 1.Swapping the order ensures the generated file always wins.
♻️ Proposed fix
WORKDIR /code -# Copy only the virtual environment from the builder -COPY --from=builder /code/.venv /code/.venv -# Copy the generated protobuf file -COPY --from=builder /code/module_text_cofee/protobuf/ /code/module_text_cofee/protobuf/ -ENV PATH="/code/.venv/bin:$PATH" - # Project files COPY . ./ + +# Copy only the virtual environment from the builder +COPY --from=builder /code/.venv /code/.venv +# Copy the generated protobuf file (after project files to ensure it takes precedence) +COPY --from=builder /code/module_text_cofee/protobuf/ /code/module_text_cofee/protobuf/ +ENV PATH="/code/.venv/bin:$PATH"🤖 Prompt for AI Agents
Verify each finding against the current code and only fix it if needed. In `@athena/modules/text/module_text_cofee/Dockerfile` around lines 48 - 55, The Dockerfile currently copies the full project (COPY . ./) after copying the generated protobufs, which allows any cofee_pb2.py accidentally present in the build context to overwrite the generated files; to fix, swap the COPY order so project files are copied first (COPY . ./) and then copy the generated protobuf directory from the builder stage (COPY --from=builder /code/module_text_cofee/protobuf/ /code/module_text_cofee/protobuf/) ensuring the generated protobufs (e.g., cofee_pb2.py) in the builder take precedence over files in the build context.athena/modules/text/module_text_llm/Dockerfile (1)
37-44: Consider dropping root privileges in the runtime stage.No
USERis set, so the container runs as root by default. Adding a non-root user would further reduce runtime risk.🤖 Prompt for AI Agents
Verify each finding against the current code and only fix it if needed. In `@athena/modules/text/module_text_llm/Dockerfile` around lines 37 - 44, The Dockerfile currently leaves the runtime stage running as root; add a non-root user and switch to it in the runtime stage: create a dedicated user/group (e.g., "app" or "athena"), ensure ownership of /code and the copied .venv is changed to that user (chown /code and /code/.venv), and add a USER instruction near the end to run as that non-root user; keep WORKDIR /code and ENV PATH="/code/.venv/bin:$PATH" but ensure the PATH entry is accessible to the non-root user.athena/modules/programming/module_programming_apted/Dockerfile (2)
38-43: Make venv copy last to prevent accidental overwrite from context.Safer ordering is to copy project files first, then copy
/code/.venvfrom builder.🛡️ Proposed change
WORKDIR /code -# Copy only the virtual environment from the builder -COPY --from=builder /code/.venv /code/.venv -ENV PATH="/code/.venv/bin:$PATH" - # Project files COPY . ./ + +# Copy only the virtual environment from the builder +COPY --from=builder /code/.venv /code/.venv +ENV PATH="/code/.venv/bin:$PATH"🤖 Prompt for AI Agents
Verify each finding against the current code and only fix it if needed. In `@athena/modules/programming/module_programming_apted/Dockerfile` around lines 38 - 43, The Dockerfile currently copies the built virtualenv before the project context, which risks the project COPY overwriting parts of /code/.venv; change the order so the project files are copied first (the COPY . ./ line) and then copy the built venv from the builder using the COPY --from=builder /code/.venv /code/.venv line (leave ENV PATH="/code/.venv/bin:$PATH" as-is) so the builder venv always wins and cannot be accidentally overwritten by the build context.
21-24: Prefer explicit runtime-only Poetry install scope.Using explicit flags avoids installing the root package and dev dependencies, making the intent clear for production images. The project has a 'dev' dependency group (not optional), so the current command installs unnecessary development packages in production.
♻️ Proposed change
RUN poetry config virtualenvs.create true \ && poetry config virtualenvs.in-project true \ - && poetry install --no-interaction --no-ansi + && poetry install --only main --no-root --no-interaction --no-ansi🤖 Prompt for AI Agents
Verify each finding against the current code and only fix it if needed. In `@athena/modules/programming/module_programming_apted/Dockerfile` around lines 21 - 24, The poetry install in the Dockerfile currently installs dev deps and the root package; update the RUN step that invokes "poetry install" to perform a runtime-only installation by using Poetry's explicit scope flags (e.g., replace the current "poetry install --no-interaction --no-ansi" with a runtime-only invocation such as "poetry install --no-interaction --no-ansi --only main" for Poetry >=1.2, or "poetry install --no-interaction --no-ansi --no-dev --no-root" for older Poetry versions) so the image does not install dev dependencies or the project package at build time.iris/Dockerfile.dockerignore (1)
1-24: Add explicit secret/environment ignore patterns.This list is strong, but Line 1-24 should also explicitly ignore env/secret files to reduce accidental context leakage.
🔒 Suggested hardening
.mypy_cache/ +.env +.env.* +*.pem +*.key +secrets/🤖 Prompt for AI Agents
Verify each finding against the current code and only fix it if needed. In `@iris/Dockerfile.dockerignore` around lines 1 - 24, The dockerignore currently excludes many project dirs but lacks explicit patterns for environment and secret files; update the iris Dockerfile.dockerignore to add explicit ignores such as .env, *.env, .env.local, .env.* , *.secret, secrets/, secret*/, secrets/**/*.key, credentials/, credentials/**/*.json, .aws/, .docker/config.json, .gnupg/, and any local config files (e.g., .envrc) so environment/secret artifacts are never sent in build context; place these new patterns alongside the existing excludes in the same file (look for the existing list of top-level ignores shown in the diff) and ensure patterns cover both files and directories as given.
🤖 Prompt for all review comments with AI agents
Verify each finding against the current code and only fix it if needed.
Inline comments:
In `@athena/modules/modeling/module_modeling_llm/Dockerfile`:
- Around line 23-25: Poetry in the builder stage is installing dev/test groups
and the in-project .venv is being copied into the runtime image; change the
install invocation in the Dockerfile (the RUN that currently calls "poetry
install --no-interaction --no-ansi") to limit to runtime deps by adding "--only
main --no-root" so only main dependencies are installed into the builder venv
before copying to the runtime stage.
In `@athena/modules/programming/module_example/Dockerfile`:
- Around line 19-24: The runtime image is missing the athena source that the
editable install (develop = true in pyproject.toml) points to; add a step in the
runtime stage to copy the built athena source from the builder image into the
runtime image (i.e., run a COPY --from=builder /athena /athena in the Dockerfile
runtime stage) so the in-project .venv editable installation can resolve /athena
at container runtime.
In `@athena/modules/programming/module_programming_llm/Dockerfile`:
- Around line 19-25: The Dockerfile currently installs path dependencies as
editable (develop = true) which creates symlinks in the in-project .venv that
point to /athena and /llm_core present only in the builder stage; at runtime
those symlinks will be broken—fix by either updating the path dependencies in
pyproject.toml to use develop = false so poetry bakes the packages into the
.venv, or modify this Dockerfile to COPY --from=athena /code /athena and COPY
--from=llm_core /code /llm_core into the final runtime stage (ensure the same
/athena and /llm_core directories exist alongside the .venv), and keep
references to the Dockerfile COPY lines and pyproject.toml path dependency
entries when making the change.
In `@athena/modules/programming/module_programming_themisml/Dockerfile`:
- Around line 40-46: The runtime Dockerfile stage currently copies only the
built virtualenv (.venv) and project files, but editable installs created in the
builder produce symlinks inside .venv that point to /athena; to avoid
ModuleNotFoundError add a step to copy the athena source tree from the builder
into the runtime image (i.e., add COPY --from=builder /athena /athena) so the
symlink targets exist at runtime; place this COPY near the existing COPY
--from=builder /code/.venv /code/.venv (before or after) so PATH and CMD
["python", "-m", "module_programming_themisml"] continue to work.
In `@athena/modules/text/module_text_cofee/Dockerfile`:
- Around line 29-30: The pyproject.toml declares athena = { path =
"../../../athena", develop = true } which causes an editable install that
creates symlinks to /athena only present in the builder stage; fix by either
removing develop = true so the package is installed as a non-editable wheel, or
add a runtime-stage copy of the built /athena from the builder (e.g., add COPY
--from=builder /athena /athena in the Dockerfile runtime stage) so the symlink
targets exist at runtime; update pyproject.toml or the Dockerfile accordingly
and rebuild.
In `@athena/modules/text/module_text_llm/Dockerfile`:
- Around line 23-25: The Dockerfile's poetry install command in the build stage
(the RUN line that calls "poetry install --no-interaction --no-ansi") installs
dev/test groups and leaves editable path deps broken in the runtime .venv;
change that invocation to include the flags "--only main --no-root" so Poetry
installs only the main group and avoids creating a project editable install,
ensuring the runtime environment does not contain missing editable path
references (adjust the RUN line that configures poetry virtualenvs and runs
poetry install).
In `@iris/Dockerfile`:
- Around line 18-27: Replace the non-reproducible "uv pip install ." invocation
so the build respects the copied poetry.lock: either export Poetry's locked deps
and sync them (use "poetry export" to produce a requirements lockfile and then
run "uv pip sync" against that lockfile) or migrate to uv's lockfile workflow by
generating and committing an "uv.lock" and using "uv sync --locked"; update the
Dockerfile step that currently runs "uv pip install ." to one of these
locked-install approaches and ensure the --mount cache for /root/.cache/uv
remains in place.
---
Outside diff comments:
In `@iris/Dockerfile`:
- Around line 30-48: The Dockerfile runtime stage runs as root; create a
non-root user and switch to it: add steps to create a user/group (e.g.,
appuser), chown the WORKDIR and the copied VIRTUAL_ENV (/app and /app/.venv) to
that user, and add a USER directive before the CMD so uvicorn (iris.main:app)
runs unprivileged; reference the existing WORKDIR /app, COPY --from=builder
/app/.venv, ENV VIRTUAL_ENV, and CMD ["uvicorn", "iris.main:app", ...] when
applying the changes.
---
Nitpick comments:
In `@athena/modules/programming/module_programming_apted/Dockerfile`:
- Around line 38-43: The Dockerfile currently copies the built virtualenv before
the project context, which risks the project COPY overwriting parts of
/code/.venv; change the order so the project files are copied first (the COPY .
./ line) and then copy the built venv from the builder using the COPY
--from=builder /code/.venv /code/.venv line (leave ENV
PATH="/code/.venv/bin:$PATH" as-is) so the builder venv always wins and cannot
be accidentally overwritten by the build context.
- Around line 21-24: The poetry install in the Dockerfile currently installs dev
deps and the root package; update the RUN step that invokes "poetry install" to
perform a runtime-only installation by using Poetry's explicit scope flags
(e.g., replace the current "poetry install --no-interaction --no-ansi" with a
runtime-only invocation such as "poetry install --no-interaction --no-ansi
--only main" for Poetry >=1.2, or "poetry install --no-interaction --no-ansi
--no-dev --no-root" for older Poetry versions) so the image does not install dev
dependencies or the project package at build time.
In `@athena/modules/programming/module_programming_themisml/Dockerfile`:
- Around line 9-11: In the Dockerfile RUN line that installs packages (the
command containing "apt-get update && apt-get install -y --no-install-recommends
\ build-essential gcc libpq-dev \ && rm -rf /var/lib/apt/lists/*"), remove the
redundant "gcc" package from the install list because it is provided by
"build-essential"; leave "build-essential" and "libpq-dev" and keep the existing
cleanup (rm -rf) unchanged.
In `@athena/modules/programming/module_programming_winnowing/Dockerfile`:
- Around line 22-24: Update the Dockerfile RUN step that calls poetry install
(the RUN line containing "poetry install --no-interaction --no-ansi") to exclude
development dependencies by adding the appropriate flag (e.g., --only main) so
the created virtualenv contains only production deps; edit the RUN command that
configures poetry and runs "poetry install" to append the flag and rebuild the
image to reduce runtime image size.
In `@athena/modules/text/module_text_cofee/Dockerfile`:
- Around line 31-34: The RUN line that runs Poetry should install only
dependencies in the build stage; update the command that currently calls "poetry
install --no-interaction --no-ansi" to include the --no-root flag so Poetry does
not try to install the project itself (i.e., change the RUN block containing the
poetry config lines to run "poetry install --no-root --no-interaction
--no-ansi").
- Around line 48-55: The Dockerfile currently copies the full project (COPY .
./) after copying the generated protobufs, which allows any cofee_pb2.py
accidentally present in the build context to overwrite the generated files; to
fix, swap the COPY order so project files are copied first (COPY . ./) and then
copy the generated protobuf directory from the builder stage (COPY
--from=builder /code/module_text_cofee/protobuf/
/code/module_text_cofee/protobuf/) ensuring the generated protobufs (e.g.,
cofee_pb2.py) in the builder take precedence over files in the build context.
In `@athena/modules/text/module_text_llm/Dockerfile`:
- Around line 37-44: The Dockerfile currently leaves the runtime stage running
as root; add a non-root user and switch to it in the runtime stage: create a
dedicated user/group (e.g., "app" or "athena"), ensure ownership of /code and
the copied .venv is changed to that user (chown /code and /code/.venv), and add
a USER instruction near the end to run as that non-root user; keep WORKDIR /code
and ENV PATH="/code/.venv/bin:$PATH" but ensure the PATH entry is accessible to
the non-root user.
In `@iris/Dockerfile.dockerignore`:
- Around line 1-24: The dockerignore currently excludes many project dirs but
lacks explicit patterns for environment and secret files; update the iris
Dockerfile.dockerignore to add explicit ignores such as .env, *.env, .env.local,
.env.* , *.secret, secrets/, secret*/, secrets/**/*.key, credentials/,
credentials/**/*.json, .aws/, .docker/config.json, .gnupg/, and any local config
files (e.g., .envrc) so environment/secret artifacts are never sent in build
context; place these new patterns alongside the existing excludes in the same
file (look for the existing list of top-level ignores shown in the diff) and
ensure patterns cover both files and directories as given.
In `@nebula/docker/faq/Dockerfile`:
- Around line 1-35: The Dockerfile currently runs the image as root; add a
non-root user and ensure /app is owned by that user before switching to it to
harden runtime. In the Dockerfile (builder/runtime stages), create a dedicated
user/group (e.g., appuser/appgroup), chown the application files and the copied
virtualenv at /app to that uid/gid, and add a USER instruction so the final
runtime executes uvicorn as that non-root user instead of root.
In `@nebula/docker/transcriber/Dockerfile`:
- Around line 1-46: Add a non-root runtime user to the final image to improve
container security: create a user/group (e.g., "nebula"), chown /app and any
runtime dirs to that user after copying the venv and source (refer to the COPY
--from=builder /app/.venv /app/.venv, COPY nebula/src/nebula ./nebula and
WORKDIR /app lines), then switch to that user with USER before the EXPOSE/CMD
lines so uvicorn (nebula.transcript.app:app) runs unprivileged; ensure PATH and
PYTHONPATH remain correct for the in-project venv.
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athena/assessment_module_manager/.dockerignoreathena/assessment_module_manager/Dockerfileathena/athena/.dockerignoreathena/athena/Dockerfileathena/llm_core/.dockerignoreathena/llm_core/Dockerfileathena/log_viewer/.dockerignoreathena/log_viewer/Dockerfileathena/modules/modeling/module_modeling_llm/.dockerignoreathena/modules/modeling/module_modeling_llm/Dockerfileathena/modules/programming/module_example/.dockerignoreathena/modules/programming/module_example/Dockerfileathena/modules/programming/module_programming_apted/.dockerignoreathena/modules/programming/module_programming_apted/Dockerfileathena/modules/programming/module_programming_llm/.dockerignoreathena/modules/programming/module_programming_llm/Dockerfileathena/modules/programming/module_programming_themisml/.dockerignoreathena/modules/programming/module_programming_themisml/Dockerfileathena/modules/programming/module_programming_winnowing/.dockerignoreathena/modules/programming/module_programming_winnowing/Dockerfileathena/modules/text/module_text_cofee/.dockerignoreathena/modules/text/module_text_cofee/Dockerfileathena/modules/text/module_text_llm/.dockerignoreathena/modules/text/module_text_llm/Dockerfileiris/Dockerfileiris/Dockerfile.dockerignorenebula/docker/faq/Dockerfilenebula/docker/faq/Dockerfile.dockerignorenebula/docker/transcriber/Dockerfilenebula/docker/transcriber/Dockerfile.dockerignore
| RUN poetry config virtualenvs.create true \ | ||
| && poetry config virtualenvs.in-project true \ | ||
| && poetry install --no-interaction --no-ansi |
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pyproject="athena/modules/modeling/module_modeling_llm/pyproject.toml"
echo "== Poetry install command in Dockerfile =="
rg -n 'poetry install' "$dockerfile"
echo
echo "== Dependency groups declared in pyproject.toml =="
rg -n '^\[tool\.poetry\.dev-dependencies\]|^\[tool\.poetry\.group\..*\.dependencies\]' "$pyproject" || true
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Limit Poetry install to runtime deps only in builder venv.
At line 25, poetry install pulls dev and test dependency groups (confirmed in pyproject.toml) along with main, and the entire .venv is copied to the runtime stage at line 40. For this optimization PR, apply --only main --no-root to exclude non-runtime dependencies and keep the runtime image minimal.
Proposed diff
RUN poetry config virtualenvs.create true \
&& poetry config virtualenvs.in-project true \
- && poetry install --no-interaction --no-ansi
+ && poetry install --only main --no-root --no-interaction --no-ansi📝 Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| RUN poetry config virtualenvs.create true \ | |
| && poetry config virtualenvs.in-project true \ | |
| && poetry install --no-interaction --no-ansi | |
| RUN poetry config virtualenvs.create true \ | |
| && poetry config virtualenvs.in-project true \ | |
| && poetry install --only main --no-root --no-interaction --no-ansi |
🤖 Prompt for AI Agents
Verify each finding against the current code and only fix it if needed.
In `@athena/modules/modeling/module_modeling_llm/Dockerfile` around lines 23 - 25,
Poetry in the builder stage is installing dev/test groups and the in-project
.venv is being copied into the runtime image; change the install invocation in
the Dockerfile (the RUN that currently calls "poetry install --no-interaction
--no-ansi") to limit to runtime deps by adding "--only main --no-root" so only
main dependencies are installed into the builder venv before copying to the
runtime stage.
| # athena module (from the Dockerfile in the athena folder) | ||
| COPY --from=athena /code /athena | ||
| # install dependencies | ||
| # install dependencies into an in-project venv | ||
| RUN poetry config virtualenvs.create true \ | ||
| && poetry config virtualenvs.in-project true \ | ||
| && poetry install --no-interaction --no-ansi |
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Copy /athena source to the runtime stage.
The pyproject.toml installs athena with develop = true, which creates an editable installation that references the source files at /athena. The builder stage copies /athena from the athena image and uses it to install dependencies, but the runtime stage only copies the .venv and omits the athena source code. At runtime, the editable installation will fail because it points to a non-existent /athena directory.
Add COPY --from=builder /athena /athena before or after line 39 in the runtime stage to ensure the editable dependency can be resolved.
🤖 Prompt for AI Agents
Verify each finding against the current code and only fix it if needed.
In `@athena/modules/programming/module_example/Dockerfile` around lines 19 - 24,
The runtime image is missing the athena source that the editable install
(develop = true in pyproject.toml) points to; add a step in the runtime stage to
copy the built athena source from the builder image into the runtime image
(i.e., run a COPY --from=builder /athena /athena in the Dockerfile runtime
stage) so the in-project .venv editable installation can resolve /athena at
container runtime.
| # athena module (from the Dockerfile in the athena folder) | ||
| COPY --from=athena /code /athena | ||
| COPY --from=llm_core /code /llm_core | ||
| # install dependencies | ||
| # install dependencies into an in-project venv | ||
| RUN poetry config virtualenvs.create true \ | ||
| && poetry config virtualenvs.in-project true \ | ||
| && poetry install --no-interaction --no-ansi |
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if [ -f "athena/modules/programming/module_programming_llm/pyproject.toml" ]; then
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Remove develop = true from path dependencies or copy source directories to the runtime stage.
The pyproject.toml configures path dependencies with develop = true, which creates editable installs via symlinks in the .venv. The builder stage copies /athena and /llm_core, but the runtime stage only copies the .venv and project files—not the source directories. At runtime, the symlinks will be broken, causing import failures when the module attempts to use these packages.
Either:
- Change path dependencies to
develop = falseinpyproject.toml(installs packages into.venvdirectly), or - Copy
/athenaand/llm_coreto the runtime stage as well.
Current Dockerfile snippet (lines 19-25)
# athena module (from the Dockerfile in the athena folder)
COPY --from=athena /code /athena
COPY --from=llm_core /code /llm_core
# install dependencies into an in-project venv
RUN poetry config virtualenvs.create true \
&& poetry config virtualenvs.in-project true \
&& poetry install --no-interaction --no-ansi🤖 Prompt for AI Agents
Verify each finding against the current code and only fix it if needed.
In `@athena/modules/programming/module_programming_llm/Dockerfile` around lines 19
- 25, The Dockerfile currently installs path dependencies as editable (develop =
true) which creates symlinks in the in-project .venv that point to /athena and
/llm_core present only in the builder stage; at runtime those symlinks will be
broken—fix by either updating the path dependencies in pyproject.toml to use
develop = false so poetry bakes the packages into the .venv, or modify this
Dockerfile to COPY --from=athena /code /athena and COPY --from=llm_core /code
/llm_core into the final runtime stage (ensure the same /athena and /llm_core
directories exist alongside the .venv), and keep references to the Dockerfile
COPY lines and pyproject.toml path dependency entries when making the change.
| COPY --from=builder /code/.venv /code/.venv | ||
| ENV PATH="/code/.venv/bin:$PATH" | ||
|
|
||
| # Project files | ||
| COPY . ./ | ||
|
|
||
| # poetry scripts don't work here | ||
| CMD poetry run python -m module_* No newline at end of file | ||
| CMD ["python", "-m", "module_programming_themisml"] No newline at end of file |
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cat athena/modules/programming/module_programming_themisml/pyproject.toml 2>/dev/null | grep -A5 -i athena || echo "pyproject.toml not found or no athena reference"
echo ""
echo "=== Checking Python imports of athena in module source ==="
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The runtime stage must also copy the /athena directory from the builder.
The module declares athena as a path dependency with develop = true (editable install) in pyproject.toml. Multiple source files import from athena at runtime (__main__.py, feedback_suggestions.py, etc.). When the venv is built in the builder stage with an editable install, it creates symlinks pointing to /athena. Copying only the .venv to the runtime stage breaks these symlinks, causing ModuleNotFoundError when the module starts.
Add COPY --from=builder /athena /athena before or after line 40 to copy the athena package to the runtime stage.
🤖 Prompt for AI Agents
Verify each finding against the current code and only fix it if needed.
In `@athena/modules/programming/module_programming_themisml/Dockerfile` around
lines 40 - 46, The runtime Dockerfile stage currently copies only the built
virtualenv (.venv) and project files, but editable installs created in the
builder produce symlinks inside .venv that point to /athena; to avoid
ModuleNotFoundError add a step to copy the athena source tree from the builder
into the runtime image (i.e., add COPY --from=builder /athena /athena) so the
symlink targets exist at runtime; place this COPY near the existing COPY
--from=builder /code/.venv /code/.venv (before or after) so PATH and CMD
["python", "-m", "module_programming_themisml"] continue to work.
| # athena module (from the Dockerfile in the athena folder) | ||
| COPY --from=athena /code /athena |
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The athena dependency is installed in editable mode and will cause runtime failures.
Line 11 of pyproject.toml declares: athena = { path = "../../../athena", develop = true }. This editable installation creates symlinks in the .venv pointing to /athena, which exists only in the builder stage. The runtime stage copies only .venv and project files (lines 49, 55) but not the /athena directory, causing broken references at runtime.
Resolve this by either:
- Removing
develop = trueto install as a non-editable wheel, or - Adding
COPY --from=builder /athena /athenain the runtime stage.
🤖 Prompt for AI Agents
Verify each finding against the current code and only fix it if needed.
In `@athena/modules/text/module_text_cofee/Dockerfile` around lines 29 - 30, The
pyproject.toml declares athena = { path = "../../../athena", develop = true }
which causes an editable install that creates symlinks to /athena only present
in the builder stage; fix by either removing develop = true so the package is
installed as a non-editable wheel, or add a runtime-stage copy of the built
/athena from the builder (e.g., add COPY --from=builder /athena /athena in the
Dockerfile runtime stage) so the symlink targets exist at runtime; update
pyproject.toml or the Dockerfile accordingly and rebuild.
| RUN poetry config virtualenvs.create true \ | ||
| && poetry config virtualenvs.in-project true \ | ||
| && poetry install --no-interaction --no-ansi |
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pyproject="athena/modules/text/module_text_llm/pyproject.toml"
lockfile="athena/modules/text/module_text_llm/poetry.lock"
echo "== Poetry install command =="
rg -n 'poetry install' "$dockerfile"
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echo "== Declared dependency groups (look for dev/test/etc.) =="
rg -n '^\[tool\.poetry\.(dev-dependencies|group\.[^.]+\.dependencies)\]' "$pyproject" || echo "(no extra groups found)"
echo
echo "== Path deps + editable flags in pyproject =="
rg -n 'path\s*=|develop\s*=' "$pyproject" || echo "(no path deps or editable flags found)"
echo
echo "== Directory/editable deps in lockfile =="
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Add --only main --no-root flags to poetry install command.
Line 25 runs poetry install without constraints, which installs dev/test groups by default. The pyproject.toml declares editable path dependencies (athena and llm_core with develop = true) that the build stage copies but the runtime stage (line 40) does not. This leaves the runtime .venv with broken references.
Required Dockerfile fix
RUN poetry config virtualenvs.create true \
&& poetry config virtualenvs.in-project true \
- && poetry install --no-interaction --no-ansi
+ && poetry install --only main --no-root --no-interaction --no-ansi📝 Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| RUN poetry config virtualenvs.create true \ | |
| && poetry config virtualenvs.in-project true \ | |
| && poetry install --no-interaction --no-ansi | |
| RUN poetry config virtualenvs.create true \ | |
| && poetry config virtualenvs.in-project true \ | |
| && poetry install --only main --no-root --no-interaction --no-ansi |
🤖 Prompt for AI Agents
Verify each finding against the current code and only fix it if needed.
In `@athena/modules/text/module_text_llm/Dockerfile` around lines 23 - 25, The
Dockerfile's poetry install command in the build stage (the RUN line that calls
"poetry install --no-interaction --no-ansi") installs dev/test groups and leaves
editable path deps broken in the runtime .venv; change that invocation to
include the flags "--only main --no-root" so Poetry installs only the main group
and avoids creating a project editable install, ensuring the runtime environment
does not contain missing editable path references (adjust the RUN line that
configures poetry virtualenvs and runs poetry install).
| COPY iris/pyproject.toml iris/poetry.lock ./ | ||
|
|
||
| # Copy memiris (path dependency required for resolution) | ||
| COPY memiris ../memiris | ||
|
|
||
| # Install poetry | ||
| RUN pip install poetry | ||
| # Create a stub package so uv can resolve the project without full source | ||
| RUN mkdir -p src/iris && echo '__version__ = "3.0.0"' > src/iris/__init__.py && touch README.MD | ||
|
|
||
| # Install all main dependencies (cached unless pyproject.toml or memiris changes) | ||
| RUN --mount=type=cache,target=/root/.cache/uv uv pip install . |
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🌐 Web query:
uv pip install poetry.lock dependency resolution
💡 Result:
uv pip install does not use poetry.lock as an input lockfile for dependency resolution. In uv’s “pip interface”, uv pip install -r … supports requirements.txt and pyproject.toml inputs (plus other pip-style specifiers), but poetry.lock isn’t a supported -r file format. [1]
So you have three practical options:
-
Use Poetry to get the exact
poetry.lockresolution
Use Poetry’s install/sync workflow (e.g.,poetry sync) if the lockfile is the source of truth. (Example of platforms treatingpoetry.lockas “use Poetry”.) [2] -
Migrate to uv’s lockfile and then install deterministically with uv
In a Poetry project, uv can read the Poetry-stylepyproject.toml; run:uv sync→ creates/updatesuv.lock(uv’s lockfile) [3]
Then in CI/production:uv sync --locked→ install exactly what’s inuv.lock(no re-resolution drift). [2]
-
If you insist on
uv pip …, accept that it will resolve (not “replay”poetry.lock)
uv’s resolver will compute a solution based on the requirements you give it, and it will only “prefer” already-locked versions if you’re using a uv lockfile / requirements output that uv understands. [4]
Sources:
[1] uv docs: installing packages from requirements.txt / pyproject.toml via uv pip install -r https://docs.astral.sh/uv/pip/packages/
[2] Heroku Dev Center: behavior with poetry.lock (Poetry) vs uv.lock (uv, uv sync --locked) https://devcenter2.assets.heroku.com/articles/python-behavior-in-heroku
[3] uv docs: uv project workflow overview (projects, uv sync, lockfile usage) https://docs.astral.sh/uv/
[4] uv docs: resolution, lockfile preference behavior https://docs.astral.sh/uv/concepts/resolution/
🌐 Web query:
uv tool how to enforce locked dependencies from poetry.lock
💡 Result:
uv can’t “sync from” poetry.lock directly (its project workflow enforces uv.lock via uv sync). To enforce Poetry’s locked versions with uv, use one of these approaches:
Option A (keep poetry.lock as source of truth): export → uv pip sync
- Export a pinned requirements file from
poetry.lock:
poetry export -f requirements.txt -o requirements.lock.txt
# optionally: --without-hashes(That export command is provided by Poetry’s export feature / plugin.) [1]
- Enforce it in the environment with uv (installs/removes to match the file):
uv pip sync requirements.lock.txt(uv pip sync is uv’s “make the env match the lock/requirements file” command.) [2]
Option B (recommended long-term): migrate to uv.lock and enforce with --locked
- Generate / maintain
uv.lock, then enforce it in CI/dev:
uv sync --locked--locked makes uv fail if uv.lock isn’t up to date with pyproject.toml (instead of silently re-locking). [3]
Related: uv export can export from uv.lock (e.g., to requirements.txt) when you need pip-compatible output. [4]
Sources
[1] Poetry export (poetry-plugin-export) https://github.com/python-poetry/poetry-plugin-export (github.com)
[2] uv pip sync example (uv docs) https://docs.astral.sh/uv/ (docs.astral.sh)
[3] uv locking/syncing, --locked semantics https://docs.astral.sh/uv/concepts/projects/sync/ (docs.astral.sh)
[4] uv export (from uv.lock) https://docs.astral.sh/uv/concepts/projects/export/ (docs.astral.sh)
Citations:
- 1: https://github.com/python-poetry/poetry-plugin-export?utm_source=openai
- 2: https://docs.astral.sh/uv/?utm_source=openai
- 3: https://docs.astral.sh/uv/concepts/projects/sync/?utm_source=openai
- 4: https://docs.astral.sh/uv/concepts/projects/export/?utm_source=openai
Replace uv pip install . with a locked dependency installation.
Line 27 uses uv pip install ., which ignores the poetry.lock file copied at line 18. The uv pip interface does not consume poetry.lock; it only reads pyproject.toml and requirements.txt. This bypasses the lockfile entirely and makes builds non-reproducible.
Choose one approach:
-
Export and sync (keep Poetry's lockfile as source of truth):
RUN poetry export -f requirements.txt -o requirements.lock.txt RUN --mount=type=cache,target=/root/.cache/uv uv pip sync requirements.lock.txt
-
Migrate to uv's lockfile (recommended for uv-based workflow):
RUN --mount=type=cache,target=/root/.cache/uv uv sync --locked(First generate
uv.locklocally viauv sync, then commit it to the repo.)
🤖 Prompt for AI Agents
Verify each finding against the current code and only fix it if needed.
In `@iris/Dockerfile` around lines 18 - 27, Replace the non-reproducible "uv pip
install ." invocation so the build respects the copied poetry.lock: either
export Poetry's locked deps and sync them (use "poetry export" to produce a
requirements lockfile and then run "uv pip sync" against that lockfile) or
migrate to uv's lockfile workflow by generating and committing an "uv.lock" and
using "uv sync --locked"; update the Dockerfile step that currently runs "uv pip
install ." to one of these locked-install approaches and ensure the --mount
cache for /root/.cache/uv remains in place.
Athena Test Results Summary
Failing Tests Summary
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📊 Detailed Coverage TableCombining 3 coverage files... 📊 Combined Coverage Summary:
Total packages: 31 Note: Coverage thresholds: ✅ (≥70%), ❌ (<70%) |
wasnertobias
changed the title
Development: Optimize Docker build times and image sizes
Athena Test Results Summary
Failing Tests Summary
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📊 Detailed Coverage TableCombining 3 coverage files... 📊 Combined Coverage Summary:
Total packages: 31 Note: Coverage thresholds: ✅ (≥70%), ❌ (<70%) |
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There hasn't been any activity on this pull request recently. Therefore, this pull request has been automatically marked as stale and will be closed if no further activity occurs within seven days. Thank you for your contributions. |
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There hasn't been any activity on this pull request recently. Therefore, this pull request has been automatically marked as stale and will be closed if no further activity occurs within seven days. Thank you for your contributions. |
Optimize Docker Build Times and Image Sizes
Summary
This PR optimizes Docker builds across the edutelligence monorepo by switching to slim base images, adding multi-stage builds, improving
.dockerignorecoverage, and migrating iris to uv.Changes
1. Slim Base Images for Athena (12 Dockerfiles)
python:3.11(~900MB) topython:3.11-slim(~150MB)build-essential,gcc, andlibpq-devin builder stages for C extension compilation (psycopg2)libpq5runtime dependency in production stages2. Multi-Stage Builds (14 Dockerfiles)
.venv— no Poetry, no compilers, no dev tools in production3. Poetry → uv Migration (iris/Dockerfile)
logos/Dockerfilewhich already uses uv successfully--mount=type=cachefor persistent dependency cache across builds4. Comprehensive
.dockerignoreFiles (15 files).dockerignorefiles (were just 4 lines) to comprehensive 27-line templates.dockerignorefiles for Athena modules that had none.dockerignorefiles (Dockerfile.dockerignore) for services using the monorepo root as build context (iris, nebula faq, nebula transcriber).dockerignore— avoids breaking sibling services that share the same build context5. Runtime Improvements
CMD poetry run python -m module_*to exec-formCMD ["python", "-m", "module_name"]for proper signal handlingWhat Was NOT Changed (by design)
logos/Dockerfile,logos/logos-ui/Dockerfile,logos/logos-landing/Dockerfile— already optimizedatlas/AtlasMl/Dockerfile— already uses multi-stage + slimCOPY --from=athena/COPY --from=llm_corecross-image dependency chainTesting
All 15 modified Dockerfiles were built and verified locally:
athena/athena/→athenabase image (slim)athena/llm_core/→llm_corebase image (slim, depends on athena)athena/assessment_module_manager/→ multi-stage (depends on athena)athena/log_viewer/→ multi-stageathena/modules/programming/module_example/→ multi-stage (depends on athena)athena/modules/programming/module_programming_apted/→ multi-stageathena/modules/programming/module_programming_llm/→ multi-stage (depends on athena + llm_core)athena/modules/programming/module_programming_themisml/→ multi-stage (Poetry 1.6.1, PyTorch)athena/modules/programming/module_programming_winnowing/→ multi-stageathena/modules/text/module_text_cofee/→ 3-stage (protobuf + builder + runtime)athena/modules/text/module_text_llm/→ multi-stageathena/modules/modeling/module_modeling_llm/→ multi-stageiris/Dockerfile→ multi-stage with uv (context: repo root)nebula/docker/faq/Dockerfile→ multi-stage (context: repo root)nebula/docker/transcriber/Dockerfile→ multi-stage (context: repo root)Expected Impact
Summary by CodeRabbit
Release Notes