[WIP] Added scripts to build environment for running nemo

nemo_env.sh

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+#!/bin/bash
+
+#SBATCH -A ICCS-SL2-CPU               # Project account for SLURM
+#SBATCH -p icelake                     # Partition name in cluster (e.g., icelake)
+#SBATCH -N 1                              # Number of nodes
+#SBATCH -t 24:00:00                    # Time limit (HH:MM:SS)
+#SBATCH -n 36                    # Number of tasks (processes) to be run in parallel
+
+# ========================
+#  Define Environment Variables
+# ========================
+export WORK_DIR="/home/sg2147/nemo_4.2.1/tests/DINO/EXP00"   # Both nemo executable and output directories are at the same location
+export NEMO_EXEC="nemo"
+
+# ======================
+# LOAD MODULES
+# ======================
+module purge
+module load rhel8/default-ccl
+module load netcdf-fortran/4.6.1/intel/intel-oneapi-mpi/kqukipdf
+module load boost/1.85.0/gcc/zouxm6hy
+
+echo "******Modules loaded successfully!******"
+
+
+# =============================
+# SET DYNAMIC LIBRARY PATHS
+# =============================
+export BASE_DIR="/rds/project/rds-5mCMIDBOkPU/ma595/nemo/NEMO/trunk"
+
+export CPATH="$BASE_DIR/inc:$CPATH"
+export LD_LIBRARY_PATH="$BASE_DIR/lib:$LD_LIBRARY_PATH"
+
+echo "******Environment paths set successfully!******"
+
+
+# =============================
+# MOVE TO WORKING DIRECTORY
+# =============================
+cd "$WORK_DIR" || { echo "Directory not found!"; exit 1; }
+
+echo "******Moved to working directory!******"
+
+# =======================================
+# DETERMINE RUN TYPE (New Run or Re-run)
+# =======================================
+RUN_TYPE=${1:-new}  # Takes the first argument passed at runtime, and Default to "new" if no argument is given
+RUN_ID=$(date +"%Y%m%d_%H%M%S")  
+
+if [[ "$RUN_TYPE" == "acc" ]]; then      ### For Accelerated run
+    OUTPUT_DIR="$WORK_DIR/acc_$RUN_ID"
+else
+    OUTPUT_DIR="$WORK_DIR/sim_$RUN_ID"   ### For Simulated run
+fi
+
+mkdir -p "$OUTPUT_DIR"
+
+echo "******Created new output folder!******"
+
+# =======================================
+# DETERMINE RUN TYPE (New Run or Re-run)
+# =======================================
+mpirun -np 36 "$NEMO_EXEC"   ### mpi is a communication protocol to run code in parallel.

submit_run.sh

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+#!/bin/bash
+export PROJECT_ACCOUNT="ICCS-SL2-CPU"
+export PARTITION="icelake"
+export NUM_NODES=1
+export TIME_LIMIT="24:00:00"
+export NUM_TASKS=36
+export WORK_DIR="/home/sg2147/nemo_4.2.1/tests/DINO/EXP00"
+export NEMO_EXEC="nemo"
+
+sbatch run_nemo.sh