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@mahmoodlab

Mahmood Lab @ Harvard/MGB

AI for Pathology Image Analysis Lab @ HMS / BWH

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  1. CLAM CLAM Public

    Open source tools for computational pathology - Nature BME

    Python 1.3k 427

  2. TRIDENT TRIDENT Public

    Toolkit for large-scale whole-slide image processing.

    Python 241 39

  3. UNI UNI Public

    Pathology Foundation Model - Nature Medicine

    Jupyter Notebook 485 66

  4. TITAN TITAN Public

    Multimodal Whole Slide Foundation Model for Pathology

    Python 217 22

  5. CONCH CONCH Public

    Vision-Language Pathology Foundation Model - Nature Medicine

    Python 366 31

  6. HEST HEST Public

    Integrating histology and spatial transcriptomics - NeurIPS 2024

    Python 282 24

Repositories

Showing 10 of 33 repositories
  • KRONOS Public

    Foundation Model for Multiplex Spatial Proteomic Images

    mahmoodlab/KRONOS’s past year of commit activity
    Jupyter Notebook 27 2 0 0 Updated Jun 6, 2025
  • TRIDENT Public

    Toolkit for large-scale whole-slide image processing.

    mahmoodlab/TRIDENT’s past year of commit activity
    Python 241 38 16 (1 issue needs help) 4 Updated Jun 6, 2025
  • Patho-Bench Public

    Standardized benchmark for computational pathology foundation models.

    mahmoodlab/Patho-Bench’s past year of commit activity
    Python 77 12 2 0 Updated May 28, 2025
  • HEST Public

    Integrating histology and spatial transcriptomics - NeurIPS 2024

    mahmoodlab/HEST’s past year of commit activity
    Python 282 24 14 1 Updated May 3, 2025
  • CLAM Public

    Open source tools for computational pathology - Nature BME

    mahmoodlab/CLAM’s past year of commit activity
    Python 1,342 GPL-3.0 427 32 9 Updated Apr 15, 2025
  • UNI Public

    Pathology Foundation Model - Nature Medicine

    mahmoodlab/UNI’s past year of commit activity
    Jupyter Notebook 485 66 24 2 Updated Mar 26, 2025
  • CONCH Public

    Vision-Language Pathology Foundation Model - Nature Medicine

    mahmoodlab/CONCH’s past year of commit activity
    Python 366 31 8 2 Updated Mar 26, 2025
  • TITAN Public

    Multimodal Whole Slide Foundation Model for Pathology

    mahmoodlab/TITAN’s past year of commit activity
    Python 217 22 2 0 Updated Mar 17, 2025
  • MMP Public

    Multimodal prototyping for cancer survival prediction - ICML 2024

    mahmoodlab/MMP’s past year of commit activity
    Jupyter Notebook 83 10 1 0 Updated Feb 22, 2025
  • PANTHER Public

    Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024

    mahmoodlab/PANTHER’s past year of commit activity
    Jupyter Notebook 134 15 0 0 Updated Feb 22, 2025
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