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@mahmoodlab

Mahmood Lab @ Harvard/MGB

AI for Pathology Image Analysis Lab @ HMS / BWH

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  1. CLAM CLAM Public

    Open source tools for computational pathology - Nature BME

    Python 1.2k 391

  2. TRIDENT TRIDENT Public

    Toolkit for large-scale whole-slide image processing.

    Python 59 4

  3. UNI UNI Public

    Towards a general-purpose foundation model for computational pathology - Nature Medicine

    Jupyter Notebook 388 56

  4. CONCH CONCH Public

    A vision-language foundation model for computational pathology - Nature Medicine

    Python 310 23

  5. TITAN TITAN Public

    Multimodal Whole Slide Foundation Model for Pathology

    Jupyter Notebook 159 17

  6. HEST HEST Public

    HEST: Bringing Spatial Transcriptomics and Histopathology together - NeurIPS 2024 (Spotlight)

    Python 223 19

Repositories

Showing 10 of 32 repositories
  • TRIDENT Public

    Toolkit for large-scale whole-slide image processing.

    mahmoodlab/TRIDENT’s past year of commit activity
    Python 59 4 2 2 Updated Feb 15, 2025
  • TITAN Public

    Multimodal Whole Slide Foundation Model for Pathology

    mahmoodlab/TITAN’s past year of commit activity
    Jupyter Notebook 159 17 0 1 Updated Feb 14, 2025
  • Patho-Bench Public

    Standardized benchmark for computational pathology foundation models.

    mahmoodlab/Patho-Bench’s past year of commit activity
    Python 29 2 0 0 Updated Feb 13, 2025
  • MADELEINE Public

    MADELEINE: multi-stain slide representation learning (ECCV'24)

    mahmoodlab/MADELEINE’s past year of commit activity
    Python 42 4 2 1 Updated Feb 14, 2025
  • HEST Public

    HEST: Bringing Spatial Transcriptomics and Histopathology together - NeurIPS 2024 (Spotlight)

    mahmoodlab/HEST’s past year of commit activity
    Python 223 19 10 0 Updated Feb 8, 2025
  • TriPath Public

    Analysis of 3D pathology samples using weakly supervised AI - Cell

    mahmoodlab/TriPath’s past year of commit activity
    Python 97 8 0 0 Updated Jan 25, 2025
  • PANTHER Public

    Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024

    mahmoodlab/PANTHER’s past year of commit activity
    Jupyter Notebook 113 12 0 0 Updated Jan 20, 2025
  • CONCH Public

    A vision-language foundation model for computational pathology - Nature Medicine

    mahmoodlab/CONCH’s past year of commit activity
    Python 310 23 4 1 Updated Jan 15, 2025
  • UNI Public

    Towards a general-purpose foundation model for computational pathology - Nature Medicine

    mahmoodlab/UNI’s past year of commit activity
    Jupyter Notebook 388 56 17 2 Updated Jan 15, 2025
  • CLAM Public

    Open source tools for computational pathology - Nature BME

    mahmoodlab/CLAM’s past year of commit activity
    Python 1,211 GPL-3.0 391 20 7 Updated Dec 6, 2024
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