massie
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adam Public
Forked from bigdatagenomics/adamA genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
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avocado Public
Forked from bigdatagenomics/avocadoA Variant Caller, Distributed
Scala Apache License 2.0 UpdatedSep 11, 2014 -
avro Public
Forked from apache/avroMirror of Apache Avro
Java Apache License 2.0 UpdatedOct 15, 2015 -
avro-scala-compiler-plugin Public
Automatically exported from code.google.com/p/avro-scala-compiler-plugin
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avrotuples Public
Avro Scala helper classes: AvroTuple[1-22]
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bdg-formats Public
Forked from bigdatagenomics/bdg-formatsOpen source formats for scalable genomic processing systems using Avro. Apache 2 licensed.
Shell Apache License 2.0 UpdatedJul 2, 2014 -
bdg-services Public
Forked from bigdatagenomics/bdg-servicesUtility classes for wrapping services or other interfaces around a Spark/ADAM cluster. Apache 2 licensed.
Scala Apache License 2.0 UpdatedOct 6, 2014 -
bdg-utils Public
Forked from bigdatagenomics/utilsGeneral (non-omics) code used across BDG products. Apache 2 licensed.
Scala Apache License 2.0 UpdatedNov 14, 2014 -
brainstorm3 Public
Forked from brainstorm-tools/brainstorm3Brainstorm software: MEG, EEG, fNIRS, ECoG, sEEG and electrophysiology
MATLAB GNU General Public License v3.0 UpdatedOct 5, 2024 -
chipper Public
Fast proteasomal cleavage detection. Apache-licensed.
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covid-19 Public
Forked from k-sys/covid-19A collection of work related to COVID-19
Jupyter Notebook UpdatedApr 27, 2020 -
Cuckoo-hash-map Public
Java Implementation of Map interface using Cuckoo Hashing
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dwm Public
Forked from Digital-Chaos/dwmdwm - Suckless dynamic window manager (mirror)
C MIT License UpdatedOct 30, 2025 -
eggo Public
Forked from bigdatagenomics/eggoReady-to-go Parquet-formatted public 'omics datasets
Python Apache License 2.0 UpdatedSep 17, 2015 -
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gastore Public
Forked from ga4gh/gastoreSample code to inform a discussion around content-addressable storage
Scala Apache License 2.0 UpdatedApr 8, 2015 -
gatk Public
Forked from broadinstitute/gatkGATK4 development
Java BSD 3-Clause "New" or "Revised" License UpdatedNov 10, 2015 -
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khmer-ngram Public
Forked from ctb/khmer-ngramSimple probabilistic de Bruijn graph representation
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labs Public
Forked from genomicsclass/labsScripts for the PH525x: Data Analysis for Genomics
R MIT License UpdatedApr 9, 2014 -
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nixpkgs Public
Forked from NixOS/nixpkgsNix Packages collection & NixOS
Nix MIT License UpdatedDec 1, 2025 -
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notebooks Public
Repo to hold Jupyter notebooks