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Bump the dependencies group across 1 directory with 69 updates#1120

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Bumps the dependencies group with 69 updates in the / directory:

Package From To
pydantic 2.13.3 2.13.4
pydantic-settings 2.14.0 2.14.2
pymongo 4.10.1 4.17.0
monty 2026.2.18 2026.5.18
tqdm 4.67.3 4.68.3
pandas 3.0.2 3.0.3
numpy 2.4.4 2.4.6
paramiko 3.5.1 5.0.0
msgpack 1.1.2 1.2.1
orjson 3.11.8 3.11.9
boto3 1.42.96 1.43.38
click 8.3.3 8.4.2
ipython 9.13.0 9.15.0
regex 2026.4.4 2026.6.28
azure-storage-blob 12.27.1 12.30.0
fastapi 0.136.1 0.138.2
uvicorn 0.46.0 0.49.0
moto 5.1.22 5.2.2
responses 0.21.0 0.26.1
anyio 4.13.0 4.14.1
azure-core 1.39.0 1.41.0
backrefs 6.2 7.0
botocore 1.42.96 1.43.38
certifi 2026.4.22 2026.6.17
coverage 7.13.5 7.14.3
cryptography 47.0.0 49.0.0
decorator 5.2.1 5.3.1
distlib 0.4.0 0.4.3
filelock 3.29.0 3.29.4
fonttools 4.62.1 4.63.0
griffelib 2.0.2 2.1.0
idna 3.13 3.18
jedi 0.19.2 0.20.0
lxml 6.1.0 6.1.1
markdown-it-py 4.0.0 4.2.0
matplotlib 3.10.9 3.11.0
matplotlib-inline 0.2.1 0.2.2
mdit-py-plugins 0.5.0 0.6.1
mkdocstrings-python 2.0.3 2.0.5
mpmath 1.3.0 1.4.1
msal 1.36.0 1.37.0
narwhals 2.20.0 2.22.1
parso 0.8.6 0.8.7
platformdirs 4.9.6 4.10.0
plotly 6.7.0 6.8.0
pydantic-core 2.46.3 2.47.0
pyjwt 2.12.1 2.13.0
pymatgen 2026.3.23 2026.5.4
pymatgen-core 2026.4.16 2026.5.18
pymdown-extensions 10.21.2 11.0
pytest 9.0.3 9.1.1
pytest-asyncio 1.3.0 1.4.0
python-discovery 1.2.2 1.4.2
python-multipart 0.0.26 0.0.32
pytz 2026.1.post1 2026.2
requests 2.33.1 2.34.2
rpds-py 0.30.0 2026.6.3
ruff 0.15.12 0.15.20
s3transfer 0.16.1 0.19.0
starlette 1.0.0 1.3.1
textual 8.2.4 8.2.8
traitlets 5.14.3 5.15.1
types-python-dateutil 2.9.0.20260408 2.9.0.20260518
types-pyyaml 6.0.12.20260408 6.0.12.20260518
urllib3 2.6.3 2.7.0
virtualenv 21.2.4 21.5.1
wcwidth 0.6.0 0.8.2
httpcore2 2.4.0 2.5.0
httpx2 2.4.0 2.5.0

Updates pydantic from 2.13.3 to 2.13.4

Release notes

Sourced from pydantic's releases.

v2.13.4 2026-05-06

v2.13.4 (2026-05-06)

What's Changed

Packaging

Fixes

Full Changelog: pydantic/pydantic@v2.13.3...v2.13.4

Changelog

Sourced from pydantic's changelog.

v2.13.4 (2026-05-06)

GitHub release

What's Changed

Packaging

Fixes

Commits
  • cf67d4b Fix linting
  • f0d8a21 Prepare release v2.13.4
  • 5e3fe1d Check for pydantic tag pattern in CI
  • 7f9edcc Document tagging conventions
  • b46a0c9 Adapt pydantic-core linker flags on macOS
  • 50629c8 Update to PyPy 7.3.22
  • 8522ebb Preserve RootModel core metadata
  • a37f3af Adapt MISSING sentinel test to work with unreleased typing_extensions ver...
  • 909259a Remove Logfire example in documentation
  • 2c4174c Bump libc from 0.2.155 to 0.2.185
  • See full diff in compare view

Updates pydantic-settings from 2.14.0 to 2.14.2

Release notes

Sourced from pydantic-settings's releases.

v2.14.2

What's Changed

This is a security patch release.

Security

Fixes GHSA-4xgf-cpjx-pc3j: NestedSecretsSettingsSource with secrets_nested_subdir=True could follow a symbolic link inside secrets_dir pointing outside it, reading out-of-tree files into settings values and bypassing the secrets_dir_max_size cap. Affected versions: >= 2.12.0, < 2.14.2.

Full Changelog: pydantic/pydantic-settings@v2.14.1...v2.14.2

v2.14.1

What's Changed

Full Changelog: pydantic/pydantic-settings@v2.14.0...v2.14.1

Commits

Updates pymongo from 4.10.1 to 4.17.0

Release notes

Sourced from pymongo's releases.

PyMongo 4.17.0

Community notes

What's Changed

... (truncated)

Changelog

Sourced from pymongo's changelog.

Changes in Version 4.17.0 (2026/04/20)

PyMongo 4.17 brings a number of changes including:

  • has_key, iterkeys and itervalues in :class:bson.son.SON have been deprecated and will be removed in PyMongo 5.0. These methods were deprecated in favor of the standard dictionary containment operator in and the keys() and values() methods, respectively.
  • Added the :meth:~pymongo.asynchronous.client_session.AsyncClientSession.bind and :meth:~pymongo.client_session.ClientSession.bind methods that allow users to bind a session to all database operations within the scope of a context manager instead of having to explicitly pass the session to each individual operation. See the Transactions docs <https://www.mongodb.com/docs/languages/python/pymongo-driver/current/crud/transactions/#methods>_ for examples and more information.
  • Added support for MongoDB's Intelligent Workload Management (IWM) and ingress connection rate limiting features in MongoDB server version 9.0. The driver will gracefully handle write-blocking scenarios and optimizes connection establishment during high-load conditions to maintain application availability.

Changes in Version 4.16.0 (2026/01/07)

PyMongo 4.16 brings a number of changes including:

  • Removed invalid documents from :class:bson.errors.InvalidDocument error messages as doing so may leak sensitive user data. Instead, invalid documents are stored in :attr:bson.errors.InvalidDocument.document.
  • PyMongo now requires dnspython>=2.6.1, since dnspython 1.0 is no longer maintained. The minimum version is 2.6.1 to account for CVE-2023-29483 <https://www.cve.org/CVERecord?id=CVE-2023-29483>_.
  • Removed support for Eventlet. Eventlet is actively being sunset by its maintainers and has compatibility issues with PyMongo's dnspython dependency.
  • Use Zstandard support from the standard library for Python 3.14+, and use backports.zstd for older versions.
  • Fixed return type annotation for find_one_and_* methods on :class:~pymongo.asynchronous.collection.AsyncCollection and :class:~pymongo.synchronous.collection.Collection to include None.
  • Added support for NumPy 1D-arrays in :class:bson.binary.BinaryVector.
  • Prevented :class:~pymongo.encryption.ClientEncryption from loading the crypt shared library to fix "MongoCryptError: An existing crypt_shared library is loaded by the application" unless the linked library search path is set.

Changes in Version 4.15.5 (2025/12/02)

Version 4.15.5 is a bug fix release.

  • Fixed a bug that could cause AutoReconnect("connection pool paused") errors when cursors fetched more documents from the database after SDAM heartbeat failures.

Changes in Version 4.15.4 (2025/10/21)

Version 4.15.4 is a bug fix release.

  • Relaxed the callback type of :meth:~pymongo.asynchronous.client_session.AsyncClientSession.with_transaction to allow the broader Awaitable type rather than only Coroutine objects.
  • Added the missing Python 3.14 trove classifier to the package metadata.

... (truncated)

Commits
  • f2103a9 Prep branch v4.17
  • 3491c08 PYTHON-5801 - Update changelog for 4.17 release (#2762)
  • 912ef33 PYTHON-5798 - Overload retargeting prose tests do not ensure that sec… (#2760)
  • b4e2c03 PYTHON-5800 - Simple collation is included in index information (#2761)
  • f31ba09 PYTHON-5797 - Add IWM and Overload Error links to changelog (#2757)
  • 5da9183 PYTHON-5794 - Add prose tests to verify correct retry behavior when a… (#2755)
  • 35e51a5 Revert "PYTHON-5768 Add AGENTS.md w/copilot instructions" (#2744) (#2754)
  • f41dd5c PYTHON-5772 Increase _gcp_helpers.py coverage (#2749)
  • 49e7a05 PYTHON-5760 Increase _azure_helpers.py coverage (#2747)
  • a2b0cd8 PYTHON-5795 Fix absolute link to CONTRIBUTING.md in README.md (#2756)
  • Additional commits viewable in compare view

Updates monty from 2026.2.18 to 2026.5.18

Release notes

Sourced from monty's releases.

v2026.5.18

2026.5.18

  • Add Python 3.14 support (#768, @​DanielYang59).
  • Optimize hot paths across monty.json, monty.collections, monty.dev, monty.inspect, and monty.io (#791).
  • Introduce monty.json.TypeHandler + register/unregister plugin API so third-party packages can teach MontyEncoder/MontyDecoder about custom types without forking. Built-in types (datetime, uuid, pathlib, numpy, torch, pandas, pint, bson) are migrated to handlers with identical dict shapes.
  • Add serialization support for bson.dbref.DBRef (collection, id, optional database, optional extras; nested ids recurse through MontyDecoder). Closes #746, @​mkhorton.
  • Deprecate monty.fractions.gcd, monty.fractions.lcm, monty.functools.nCr, monty.functools.nPr, and monty.string.is_string in favor of stdlib equivalents.
  • Modernize type hints to PEP 585/604 and add return type annotations to public functions.
Changelog

Sourced from monty's changelog.

2026.5.18

  • Add Python 3.14 support (#768, @​DanielYang59).
  • Optimize hot paths across monty.json, monty.collections, monty.dev, monty.inspect, and monty.io (#791).
  • Introduce monty.json.TypeHandler + register/unregister plugin API so third-party packages can teach MontyEncoder/MontyDecoder about custom types without forking. Built-in types (datetime, uuid, pathlib, numpy, torch, pandas, pint, bson) are migrated to handlers with identical dict shapes.
  • Add serialization support for bson.dbref.DBRef (collection, id, optional database, optional extras; nested ids recurse through MontyDecoder). Closes #746, @​mkhorton.
  • Deprecate monty.fractions.gcd, monty.fractions.lcm, monty.functools.nCr, monty.functools.nPr, and monty.string.is_string in favor of stdlib equivalents.
  • Modernize type hints to PEP 585/604 and add return type annotations to public functions.
Commits
  • 6c3f12b Merge pull request #792 from materialyzeai/feat/json-typehandler-plugin
  • f28f2b0 feat(json): support bson.dbref.DBRef via merged BsonHandler (closes #746)
  • 4ac9ddd refactor(json): merge PandasDataFrameHandler+PandasSeriesHandler
  • d0518da fix(json): satisfy mypy on decoder dispatch and Windows test
  • bc3ec21 feat(json): TypeHandler plugin API for MontyEncoder/MontyDecoder
  • b8e7c63 docs: clean up module and function docstrings; release v2026.5.18
  • 319c43d Merge pull request #791 from materialyzeai/perf/optimize-hot-paths
  • a770992 chore: deprecate gcd, lcm, nCr, nPr, is_string wrappers
  • ae392d9 Merge branch 'perf/optimize-hot-paths' of github.com:materialyzeai/monty into...
  • 3ba81f3 Update uv.lock.
  • Additional commits viewable in compare view

Updates tqdm from 4.67.3 to 4.68.3

Release notes

Sourced from tqdm's releases.

tqdm v4.68.3 stable

  • utils: delay os.get_terminal_size (#1763 <- #1760)
  • autonotebook: support QtConsole, Spyder, JupyterLite (#1763, #1628, #1559 <- #1283, #1098, #512)
  • minor docs updates
    • fix typo (#1762)
    • use git-fame
  • misc minor framework updates
    • fix & update CI build
    • pre-commit: add docs & metadata generation
    • move tox.ini -> pyproject.toml, move tox-gh-actions -> tox-gh
    • add Python 3.14, drop 3.7 support

tqdm v4.68.2 stable

  • revert accidental change to ascii default (fixes #1760)
    • UnicodeEncodeError: 'charmap' codec can't encode characters in position 6-7: character maps to <undefined> can be fixed by installing tqdm!=4.68.0,!=4.68.1
  • misc docs updates
    • fix links
    • replace stray rst -> md syntax
    • consistent "progress bar" terminology (#1737)
  • tests: fix coverage (fixes #1760)

tqdm v4.68.1 stable

tqdm v4.68.0 stable

  • utils: simplify terminal size detection (#1760)
  • contrib
    • itertools (#1760)
      • add chain, permutations, combinations, combinations_with_replacement, batched
      • add product(repeat=1) keyword argument (#1428)
    • fix discord, telegram error handling
    • fix discord, slack, telegram format for total=None
  • soft-deprecate tqdm.utils.envwrap -> envwrap
  • benchmarks: fix asv
  • misc linting
  • misc framework updates
    • CI: migrate manual job to pre-commit.ci
    • bump workflow actions & pre-commit hooks
Commits
  • 9aff609 bump version, merge pull request #1763 from tqdm/jupyterlite
  • 9872f80 drop date from snap version str to fix pydantic
  • b829334 support QtConsole, Spyder, JupyterLite
  • 6fa4867 delay os.get_terminal_size
  • 748e107 lint
  • e6e29eb move tox.ini -> pyproject.toml
  • 617e4fa tox-gh-actions -> tox-gh
  • c49c50d add python 3.14, drop python 3.7 support
  • fa2bcdb pre-commit: tqdm.1
  • 1ec7988 auto git-fame
  • Additional commits viewable in compare view

Updates pandas from 3.0.2 to 3.0.3

Release notes

Sourced from pandas's releases.

pandas 3.0.3

We are pleased to announce the release of pandas 3.0.3. This is a patch release in the 3.0.x series and includes some regression fixes and bug fixes. We recommend that all users of the 3.0.x series upgrade to this version.

See the full whatsnew for a list of all the changes.

Pandas 3.0 supports Python 3.11 and higher. The release can be installed from PyPI:

python -m pip install --upgrade pandas==3.0.*

Or from conda-forge

conda install -c conda-forge pandas=3.0

Please report any issues with the release on the pandas issue tracker.

Thanks to all the contributors who made this release possible.

Commits
  • 72f2fea RLS: 3.0.3 (#65590)
  • 2897590 Backport PR #65436 on branch 3.0.x (Account for privatization of matplotlib `...
  • 49894b5 Backport PR #65499 on branch 3.0.x (BUG: fix check if pyarrow is installed in...
  • 1c6d1e3 [backport 3.0.x] PERF: remove special casing for zoneinfo in tz_localize_to_u...
  • 2a54711 Backport PR #64379 on branch 3.0.x (PERF: improve performance with ZoneInfo t...
  • 036bb7c Backport PR #65482 on branch 3.0.x (PERF: don't call unique on dtypes for che...
  • bf4c182 Backport PR #65410 on branch 3.0.x (TST: also convert str index to object in ...
  • dd02d75 [backport 3.0.x] BUG: keep fsspec OpenFile alive for chained URL reads (#6547...
  • aef3d0f [backport 3.0.x] CI: lowercase types-pymysql/types-pyyaml to fix mamba 2.6.0 ...
  • bb8e248 Backport PR #65399 on branch 3.0.x (DOC: fix source link for classes in the r...
  • Additional commits viewable in compare view

Updates numpy from 2.4.4 to 2.4.6

Release notes

Sourced from numpy's releases.

v2.4.6 (May 18, 2026)

NumPy 2.4.6 Release Notes

NumPy 2.4.6 is a quick release that fixes a regression discovered in the 2.4.5 release.

This release supports Python versions 3.11-3.14

Contributors

A total of 4 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

  • !EarlMilktea
  • Charles Harris
  • Sebastian Berg
  • Warren Weckesser

Pull requests merged

A total of 4 pull requests were merged for this release.

  • #31444: MAINT: Prepare 2.4.x for further development
  • #31453: BUG: Fix regression in arr.conj()
  • #31459: BUG: np.linalg.svd(..., hermitian=True) returns non-unitary...
  • #31460: BUG: Don't call INCREF/DECREF on descr in NpyStringAcquireAllocator...

v2.4.5 (May 15, 2026)

NumPy 2.4.5 Release Notes

NumPy 2.4.5 is a patch release that fixes bugs discovered after the 2.4.4 release, has some typing improvements, and maintains infrastructure.

This release supports Python versions 3.11-3.14

Contributors

A total of 17 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

  • Aleksei Nikiforov
  • Anarion Zuo +
  • Ankit Ahlawat
  • Breno Favaretto +
  • Charles Harris
  • Igor Krivenko +
  • Ijtihed Kilani +
  • Joren Hammudoglu
  • Maarten Baert +

... (truncated)

Commits
  • b832a09 Merge pull request #31462 from charris/prepare-2.4.6
  • 57cc147 REL: Prepare for the NumPy 2.4.6 release
  • 0c72b0b Merge pull request #31459 from charris/backport-31347
  • 9778d26 BUG: core: Don't call INCREF/DECREF on descr in NpyStringAcquireAllocator. (#...
  • e0e3876 BUG: core: Don't call INCREF/DECREF on descr in NpyStringAcquireAllocator. (#...
  • d1bffeb BUG: np.linalg.svd(..., hermitian=True) returns non-unitary vh (#31347)
  • 8d8d7e5 Merge pull request #31453 from seberg/issue-31452
  • bddaab7 BUG: Fix regression in arr.conj()
  • 37a1ecc Merge pull request #31444 from charris/begin-2.4.6
  • 3c0e043 MAINT: Prepare 2.4.x for further development
  • Additional commits viewable in compare view

Updates paramiko from 3.5.1 to 5.0.0

Commits
  • 710cc5c What's a few weeks between friends?
  • ea93c59 Fix up Ed25519Key so it has non-erroring repr() during fatal errors
  • 5b90ef9 ruff/isort
  • f3864b6 Changelog fixes
  • acd4bc1 Replace hardcoded PEM format in PKey.write* with new parameter
  • 6fa1556 Bump group-exchange kex min_bits to 2048
  • eb87ad3 Fix some tests that were incorrectly passing
  • 1ecc933 Remove GSSAPI support :(
  • 9bf5fca Remove SHA1-based (non-GSS) kex methods
  • b8f75c7 Lintin' ain't easy
  • Additional commits viewable in compare view

Updates msgpack from 1.1.2 to 1.2.1

Release notes

Sourced from msgpack's releases.

v1.2.1

What's Changed

Full Changelog: msgpack/msgpack-python@v1.2.0...v1.2.1

v1.2.0

What's Changed

New Contributors

... (truncated)

Changelog

Sourced from

@dependabot
Bump the dependencies group across 1 directory with 69 updates
2b1f2da 
Bumps the dependencies group with 69 updates in the / directory:

| Package | From | To |
| --- | --- | --- |
| [pydantic](https://github.com/pydantic/pydantic) | `2.13.3` | `2.13.4` |
| [pydantic-settings](https://github.com/pydantic/pydantic-settings) | `2.14.0` | `2.14.2` |
| [pymongo](https://github.com/mongodb/mongo-python-driver) | `4.10.1` | `4.17.0` |
| [monty](https://github.com/materialsvirtuallab/monty) | `2026.2.18` | `2026.5.18` |
| [tqdm](https://github.com/tqdm/tqdm) | `4.67.3` | `4.68.3` |
| [pandas](https://github.com/pandas-dev/pandas) | `3.0.2` | `3.0.3` |
| [numpy](https://github.com/numpy/numpy) | `2.4.4` | `2.4.6` |
| [paramiko](https://github.com/paramiko/paramiko) | `3.5.1` | `5.0.0` |
| [msgpack](https://github.com/msgpack/msgpack-python) | `1.1.2` | `1.2.1` |
| [orjson](https://github.com/ijl/orjson) | `3.11.8` | `3.11.9` |
| [boto3](https://github.com/boto/boto3) | `1.42.96` | `1.43.38` |
| [click](https://github.com/pallets/click) | `8.3.3` | `8.4.2` |
| [ipython](https://github.com/ipython/ipython) | `9.13.0` | `9.15.0` |
| [regex](https://github.com/mrabarnett/mrab-regex) | `2026.4.4` | `2026.6.28` |
| [azure-storage-blob](https://github.com/Azure/azure-sdk-for-python) | `12.27.1` | `12.30.0` |
| [fastapi](https://github.com/fastapi/fastapi) | `0.136.1` | `0.138.2` |
| [uvicorn](https://github.com/Kludex/uvicorn) | `0.46.0` | `0.49.0` |
| [moto](https://github.com/getmoto/moto) | `5.1.22` | `5.2.2` |
| [responses](https://github.com/getsentry/responses) | `0.21.0` | `0.26.1` |
| [anyio](https://github.com/agronholm/anyio) | `4.13.0` | `4.14.1` |
| [azure-core](https://github.com/Azure/azure-sdk-for-python) | `1.39.0` | `1.41.0` |
| [backrefs](https://github.com/facelessuser/backrefs) | `6.2` | `7.0` |
| [botocore](https://github.com/boto/botocore) | `1.42.96` | `1.43.38` |
| [certifi](https://github.com/certifi/python-certifi) | `2026.4.22` | `2026.6.17` |
| [coverage](https://github.com/coveragepy/coveragepy) | `7.13.5` | `7.14.3` |
| [cryptography](https://github.com/pyca/cryptography) | `47.0.0` | `49.0.0` |
| [decorator](https://github.com/micheles/decorator) | `5.2.1` | `5.3.1` |
| [distlib](https://github.com/pypa/distlib) | `0.4.0` | `0.4.3` |
| [filelock](https://github.com/tox-dev/py-filelock) | `3.29.0` | `3.29.4` |
| [fonttools](https://github.com/fonttools/fonttools) | `4.62.1` | `4.63.0` |
| griffelib | `2.0.2` | `2.1.0` |
| [idna](https://github.com/kjd/idna) | `3.13` | `3.18` |
| [jedi](https://github.com/davidhalter/jedi) | `0.19.2` | `0.20.0` |
| [lxml](https://github.com/lxml/lxml) | `6.1.0` | `6.1.1` |
| [markdown-it-py](https://github.com/executablebooks/markdown-it-py) | `4.0.0` | `4.2.0` |
| [matplotlib](https://github.com/matplotlib/matplotlib) | `3.10.9` | `3.11.0` |
| [matplotlib-inline](https://github.com/ipython/matplotlib-inline) | `0.2.1` | `0.2.2` |
| [mdit-py-plugins](https://github.com/executablebooks/mdit-py-plugins) | `0.5.0` | `0.6.1` |
| [mkdocstrings-python](https://github.com/mkdocstrings/python) | `2.0.3` | `2.0.5` |
| [mpmath](https://github.com/mpmath/mpmath) | `1.3.0` | `1.4.1` |
| [msal](https://github.com/AzureAD/microsoft-authentication-library-for-python) | `1.36.0` | `1.37.0` |
| [narwhals](https://github.com/narwhals-dev/narwhals) | `2.20.0` | `2.22.1` |
| [parso](https://github.com/davidhalter/parso) | `0.8.6` | `0.8.7` |
| [platformdirs](https://github.com/tox-dev/platformdirs) | `4.9.6` | `4.10.0` |
| [plotly](https://github.com/plotly/plotly.py) | `6.7.0` | `6.8.0` |
| [pydantic-core](https://github.com/pydantic/pydantic) | `2.46.3` | `2.47.0` |
| [pyjwt](https://github.com/jpadilla/pyjwt) | `2.12.1` | `2.13.0` |
| [pymatgen](https://github.com/materialsproject/pymatgen) | `2026.3.23` | `2026.5.4` |
| [pymatgen-core](https://github.com/materialsproject/pymatgen-core) | `2026.4.16` | `2026.5.18` |
| [pymdown-extensions](https://github.com/facelessuser/pymdown-extensions) | `10.21.2` | `11.0` |
| [pytest](https://github.com/pytest-dev/pytest) | `9.0.3` | `9.1.1` |
| [pytest-asyncio](https://github.com/pytest-dev/pytest-asyncio) | `1.3.0` | `1.4.0` |
| [python-discovery](https://github.com/tox-dev/python-discovery) | `1.2.2` | `1.4.2` |
| [python-multipart](https://github.com/Kludex/python-multipart) | `0.0.26` | `0.0.32` |
| [pytz](https://github.com/stub42/pytz) | `2026.1.post1` | `2026.2` |
| [requests](https://github.com/psf/requests) | `2.33.1` | `2.34.2` |
| [rpds-py](https://github.com/crate-py/rpds) | `0.30.0` | `2026.6.3` |
| [ruff](https://github.com/astral-sh/ruff) | `0.15.12` | `0.15.20` |
| [s3transfer](https://github.com/boto/s3transfer) | `0.16.1` | `0.19.0` |
| [starlette](https://github.com/Kludex/starlette) | `1.0.0` | `1.3.1` |
| [textual](https://github.com/Textualize/textual) | `8.2.4` | `8.2.8` |
| [traitlets](https://github.com/ipython/traitlets) | `5.14.3` | `5.15.1` |
| [types-python-dateutil](https://github.com/python/typeshed) | `2.9.0.20260408` | `2.9.0.20260518` |
| [types-pyyaml](https://github.com/python/typeshed) | `6.0.12.20260408` | `6.0.12.20260518` |
| [urllib3](https://github.com/urllib3/urllib3) | `2.6.3` | `2.7.0` |
| [virtualenv](https://github.com/pypa/virtualenv) | `21.2.4` | `21.5.1` |
| [wcwidth](https://github.com/jquast/wcwidth) | `0.6.0` | `0.8.2` |
| [httpcore2](https://github.com/pydantic/httpx2) | `2.4.0` | `2.5.0` |
| [httpx2](https://github.com/pydantic/httpx2) | `2.4.0` | `2.5.0` |



Updates `pydantic` from 2.13.3 to 2.13.4
- [Release notes](https://github.com/pydantic/pydantic/releases)
- [Changelog](https://github.com/pydantic/pydantic/blob/main/HISTORY.md)
- [Commits](pydantic/pydantic@v2.13.3...v2.13.4)

Updates `pydantic-settings` from 2.14.0 to 2.14.2
- [Release notes](https://github.com/pydantic/pydantic-settings/releases)
- [Commits](pydantic/pydantic-settings@v2.14.0...v2.14.2)

Updates `pymongo` from 4.10.1 to 4.17.0
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](mongodb/mongo-python-driver@4.10.1...4.17.0)

Updates `monty` from 2026.2.18 to 2026.5.18
- [Release notes](https://github.com/materialsvirtuallab/monty/releases)
- [Changelog](https://github.com/materialyzeai/monty/blob/main/docs/changelog.md)
- [Commits](materialyzeai/monty@v2026.2.18...v2026.5.18)

Updates `tqdm` from 4.67.3 to 4.68.3
- [Release notes](https://github.com/tqdm/tqdm/releases)
- [Commits](tqdm/tqdm@v4.67.3...v4.68.3)

Updates `pandas` from 3.0.2 to 3.0.3
- [Release notes](https://github.com/pandas-dev/pandas/releases)
- [Commits](pandas-dev/pandas@v3.0.2...v3.0.3)

Updates `numpy` from 2.4.4 to 2.4.6
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.4.4...v2.4.6)

Updates `paramiko` from 3.5.1 to 5.0.0
- [Commits](paramiko/paramiko@3.5.1...5.0.0)

Updates `msgpack` from 1.1.2 to 1.2.1
- [Release notes](https://github.com/msgpack/msgpack-python/releases)
- [Changelog](https://github.com/msgpack/msgpack-python/blob/main/CHANGELOG.md)
- [Commits](msgpack/msgpack-python@v1.1.2...v1.2.1)

Updates `orjson` from 3.11.8 to 3.11.9
- [Release notes](https://github.com/ijl/orjson/releases)
- [Changelog](https://github.com/ijl/orjson/blob/master/CHANGELOG.md)
- [Commits](ijl/orjson@3.11.8...3.11.9)

Updates `boto3` from 1.42.96 to 1.43.38
- [Release notes](https://github.com/boto/boto3/releases)
- [Commits](boto/boto3@1.42.96...1.43.38)

Updates `click` from 8.3.3 to 8.4.2
- [Release notes](https://github.com/pallets/click/releases)
- [Changelog](https://github.com/pallets/click/blob/main/CHANGES.md)
- [Commits](pallets/click@8.3.3...8.4.2)

Updates `ipython` from 9.13.0 to 9.15.0
- [Release notes](https://github.com/ipython/ipython/releases)
- [Commits](ipython/ipython@9.13.0...9.15.0)

Updates `regex` from 2026.4.4 to 2026.6.28
- [Changelog](https://github.com/mrabarnett/mrab-regex/blob/hg/changelog.txt)
- [Commits](mrabarnett/mrab-regex@2026.4.4...2026.6.28)

Updates `azure-storage-blob` from 12.27.1 to 12.30.0
- [Release notes](https://github.com/Azure/azure-sdk-for-python/releases)
- [Commits](Azure/azure-sdk-for-python@azure-storage-blob_12.27.1...azure-storage-blob_12.30.0)

Updates `fastapi` from 0.136.1 to 0.138.2
- [Release notes](https://github.com/fastapi/fastapi/releases)
- [Commits](fastapi/fastapi@0.136.1...0.138.2)

Updates `uvicorn` from 0.46.0 to 0.49.0
- [Release notes](https://github.com/Kludex/uvicorn/releases)
- [Changelog](https://github.com/Kludex/uvicorn/blob/main/docs/release-notes.md)
- [Commits](Kludex/uvicorn@0.46.0...0.49.0)

Updates `moto` from 5.1.22 to 5.2.2
- [Release notes](https://github.com/getmoto/moto/releases)
- [Changelog](https://github.com/getmoto/moto/blob/master/CHANGELOG.md)
- [Commits](getmoto/moto@5.1.22...5.2.2)

Updates `responses` from 0.21.0 to 0.26.1
- [Release notes](https://github.com/getsentry/responses/releases)
- [Changelog](https://github.com/getsentry/responses/blob/master/CHANGES)
- [Commits](getsentry/responses@0.21.0...0.26.1)

Updates `anyio` from 4.13.0 to 4.14.1
- [Release notes](https://github.com/agronholm/anyio/releases)
- [Commits](agronholm/anyio@4.13.0...4.14.1)

Updates `azure-core` from 1.39.0 to 1.41.0
- [Release notes](https://github.com/Azure/azure-sdk-for-python/releases)
- [Commits](Azure/azure-sdk-for-python@azure-core_1.39.0...azure-core_1.41.0)

Updates `backrefs` from 6.2 to 7.0
- [Release notes](https://github.com/facelessuser/backrefs/releases)
- [Commits](facelessuser/backrefs@6.2...7.0)

Updates `botocore` from 1.42.96 to 1.43.38
- [Commits](boto/botocore@1.42.96...1.43.38)

Updates `certifi` from 2026.4.22 to 2026.6.17
- [Commits](certifi/python-certifi@2026.04.22...2026.06.17)

Updates `coverage` from 7.13.5 to 7.14.3
- [Release notes](https://github.com/coveragepy/coveragepy/releases)
- [Changelog](https://github.com/coveragepy/coveragepy/blob/main/CHANGES.rst)
- [Commits](coveragepy/coveragepy@7.13.5...7.14.3)

Updates `cryptography` from 47.0.0 to 49.0.0
- [Changelog](https://github.com/pyca/cryptography/blob/main/CHANGELOG.rst)
- [Commits](pyca/cryptography@47.0.0...49.0.0)

Updates `decorator` from 5.2.1 to 5.3.1
- [Release notes](https://github.com/micheles/decorator/releases)
- [Changelog](https://github.com/micheles/decorator/blob/master/CHANGES.md)
- [Commits](micheles/decorator@5.2.1...5.3.1)

Updates `distlib` from 0.4.0 to 0.4.3
- [Release notes](https://github.com/pypa/distlib/releases)
- [Changelog](https://github.com/pypa/distlib/blob/master/CHANGES.rst)
- [Commits](pypa/distlib@0.4.0...0.4.3)

Updates `filelock` from 3.29.0 to 3.29.4
- [Release notes](https://github.com/tox-dev/py-filelock/releases)
- [Changelog](https://github.com/tox-dev/filelock/blob/main/docs/changelog.rst)
- [Commits](tox-dev/filelock@3.29.0...3.29.4)

Updates `fonttools` from 4.62.1 to 4.63.0
- [Release notes](https://github.com/fonttools/fonttools/releases)
- [Changelog](https://github.com/fonttools/fonttools/blob/main/NEWS.rst)
- [Commits](fonttools/fonttools@4.62.1...4.63.0)

Updates `griffelib` from 2.0.2 to 2.1.0

Updates `idna` from 3.13 to 3.18
- [Release notes](https://github.com/kjd/idna/releases)
- [Changelog](https://github.com/kjd/idna/blob/master/HISTORY.md)
- [Commits](kjd/idna@v3.13...v3.18)

Updates `jedi` from 0.19.2 to 0.20.0
- [Changelog](https://github.com/davidhalter/jedi/blob/master/CHANGELOG.rst)
- [Commits](davidhalter/jedi@v0.19.2...v0.20.0)

Updates `lxml` from 6.1.0 to 6.1.1
- [Release notes](https://github.com/lxml/lxml/releases)
- [Changelog](https://github.com/lxml/lxml/blob/master/CHANGES.txt)
- [Commits](lxml/lxml@lxml-6.1.0...lxml-6.1.1)

Updates `markdown-it-py` from 4.0.0 to 4.2.0
- [Release notes](https://github.com/executablebooks/markdown-it-py/releases)
- [Changelog](https://github.com/executablebooks/markdown-it-py/blob/master/CHANGELOG.md)
- [Commits](executablebooks/markdown-it-py@v4.0.0...v4.2.0)

Updates `matplotlib` from 3.10.9 to 3.11.0
- [Release notes](https://github.com/matplotlib/matplotlib/releases)
- [Commits](matplotlib/matplotlib@v3.10.9...v3.11.0)

Updates `matplotlib-inline` from 0.2.1 to 0.2.2
- [Commits](ipython/matplotlib-inline@0.2.1...0.2.2)

Updates `mdit-py-plugins` from 0.5.0 to 0.6.1
- [Release notes](https://github.com/executablebooks/mdit-py-plugins/releases)
- [Changelog](https://github.com/executablebooks/mdit-py-plugins/blob/master/CHANGELOG.md)
- [Commits](executablebooks/mdit-py-plugins@v0.5.0...v0.6.1)

Updates `mkdocstrings-python` from 2.0.3 to 2.0.5
- [Release notes](https://github.com/mkdocstrings/python/releases)
- [Changelog](https://github.com/mkdocstrings/python/blob/main/CHANGELOG.md)
- [Commits](mkdocstrings/python@2.0.3...2.0.5)

Updates `mpmath` from 1.3.0 to 1.4.1
- [Release notes](https://github.com/mpmath/mpmath/releases)
- [Changelog](https://github.com/mpmath/mpmath/blob/master/CHANGES)
- [Commits](mpmath/mpmath@1.3.0...1.4.1)

Updates `msal` from 1.36.0 to 1.37.0
- [Release notes](https://github.com/AzureAD/microsoft-authentication-library-for-python/releases)
- [Changelog](https://github.com/AzureAD/microsoft-authentication-library-for-python/blob/dev/RELEASE_GUIDE.md)
- [Commits](AzureAD/microsoft-authentication-library-for-python@1.36.0...1.37.0)

Updates `narwhals` from 2.20.0 to 2.22.1
- [Release notes](https://github.com/narwhals-dev/narwhals/releases)
- [Commits](narwhals-dev/narwhals@v2.20.0...v2.22.1)

Updates `parso` from 0.8.6 to 0.8.7
- [Changelog](https://github.com/davidhalter/parso/blob/master/CHANGELOG.rst)
- [Commits](davidhalter/parso@v0.8.6...v0.8.7)

Updates `platformdirs` from 4.9.6 to 4.10.0
- [Release notes](https://github.com/tox-dev/platformdirs/releases)
- [Changelog](https://github.com/tox-dev/platformdirs/blob/main/docs/changelog.rst)
- [Commits](tox-dev/platformdirs@4.9.6...4.10.0)

Updates `plotly` from 6.7.0 to 6.8.0
- [Release notes](https://github.com/plotly/plotly.py/releases)
- [Changelog](https://github.com/plotly/plotly.py/blob/main/CHANGELOG.md)
- [Commits](plotly/plotly.py@v6.7.0...v6.8.0)

Updates `pydantic-core` from 2.46.3 to 2.47.0
- [Release notes](https://github.com/pydantic/pydantic/releases)
- [Changelog](https://github.com/pydantic/pydantic/blob/main/HISTORY.md)
- [Commits](https://github.com/pydantic/pydantic/commits)

Updates `pyjwt` from 2.12.1 to 2.13.0
- [Release notes](https://github.com/jpadilla/pyjwt/releases)
- [Changelog](https://github.com/jpadilla/pyjwt/blob/master/CHANGELOG.rst)
- [Commits](jpadilla/pyjwt@2.12.1...2.13.0)

Updates `pymatgen` from 2026.3.23 to 2026.5.4
- [Release notes](https://github.com/materialsproject/pymatgen/releases)
- [Changelog](https://github.com/materialsproject/pymatgen/blob/main/docs/CHANGES.md)
- [Commits](materialsproject/pymatgen@v2026.3.23...v2026.5.4)

Updates `pymatgen-core` from 2026.4.16 to 2026.5.18
- [Release notes](https://github.com/materialsproject/pymatgen-core/releases)
- [Changelog](https://github.com/materialsproject/pymatgen-core/blob/main/CHANGES.md)
- [Commits](materialsproject/pymatgen-core@v2026.4.16...v2026.5.18)

Updates `pymdown-extensions` from 10.21.2 to 11.0
- [Release notes](https://github.com/facelessuser/pymdown-extensions/releases)
- [Commits](facelessuser/pymdown-extensions@10.21.2...11.0)

Updates `pytest` from 9.0.3 to 9.1.1
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@9.0.3...9.1.1)

Updates `pytest-asyncio` from 1.3.0 to 1.4.0
- [Release notes](https://github.com/pytest-dev/pytest-asyncio/releases)
- [Commits](pytest-dev/pytest-asyncio@v1.3.0...v1.4.0)

Updates `python-discovery` from 1.2.2 to 1.4.2
- [Release notes](https://github.com/tox-dev/python-discovery/releases)
- [Changelog](https://github.com/tox-dev/python-discovery/blob/main/docs/changelog.rst)
- [Commits](tox-dev/python-discovery@1.2.2...1.4.2)

Updates `python-multipart` from 0.0.26 to 0.0.32
- [Release notes](https://github.com/Kludex/python-multipart/releases)
- [Changelog](https://github.com/Kludex/python-multipart/blob/main/CHANGELOG.md)
- [Commits](Kludex/python-multipart@0.0.26...0.0.32)

Updates `pytz` from 2026.1.post1 to 2026.2
- [Release notes](https://github.com/stub42/pytz/releases)
- [Commits](stub42/pytz@release_2026.1.post1...release_2026.2)

Updates `requests` from 2.33.1 to 2.34.2
- [Release notes](https://github.com/psf/requests/releases)
- [Changelog](https://github.com/psf/requests/blob/main/HISTORY.md)
- [Commits](psf/requests@v2.33.1...v2.34.2)

Updates `rpds-py` from 0.30.0 to 2026.6.3
- [Release notes](https://github.com/crate-py/rpds/releases)
- [Changelog](https://github.com/crate-py/rpds/blob/main/release.toml)
- [Commits](crate-py/rpds@v0.30.0...v2026.6.3)

Updates `ruff` from 0.15.12 to 0.15.20
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@0.15.12...0.15.20)

Updates `s3transfer` from 0.16.1 to 0.19.0
- [Changelog](https://github.com/boto/s3transfer/blob/develop/CHANGELOG.rst)
- [Commits](boto/s3transfer@0.16.1...0.19.0)

Updates `starlette` from 1.0.0 to 1.3.1
- [Release notes](https://github.com/Kludex/starlette/releases)
- [Changelog](https://github.com/Kludex/starlette/blob/main/docs/release-notes.md)
- [Commits](Kludex/starlette@1.0.0...1.3.1)

Updates `textual` from 8.2.4 to 8.2.8
- [Release notes](https://github.com/Textualize/textual/releases)
- [Changelog](https://github.com/Textualize/textual/blob/main/CHANGELOG.md)
- [Commits](Textualize/textual@v8.2.4...v8.2.8)

Updates `traitlets` from 5.14.3 to 5.15.1
- [Release notes](https://github.com/ipython/traitlets/releases)
- [Changelog](https://github.com/ipython/traitlets/blob/main/CHANGELOG.md)
- [Commits](ipython/traitlets@v5.14.3...v5.15.1)

Updates `types-python-dateutil` from 2.9.0.20260408 to 2.9.0.20260518
- [Commits](https://github.com/python/typeshed/commits)

Updates `types-pyyaml` from 6.0.12.20260408 to 6.0.12.20260518
- [Commits](https://github.com/python/typeshed/commits)

Updates `urllib3` from 2.6.3 to 2.7.0
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](urllib3/urllib3@2.6.3...2.7.0)

Updates `virtualenv` from 21.2.4 to 21.5.1
- [Release notes](https://github.com/pypa/virtualenv/releases)
- [Changelog](https://github.com/pypa/virtualenv/blob/main/docs/changelog.rst)
- [Commits](pypa/virtualenv@21.2.4...21.5.1)

Updates `wcwidth` from 0.6.0 to 0.8.2
- [Release notes](https://github.com/jquast/wcwidth/releases)
- [Commits](jquast/wcwidth@0.6.0...0.8.2)

Updates `httpcore2` from 2.4.0 to 2.5.0
- [Release notes](https://github.com/pydantic/httpx2/releases)
- [Commits](pydantic/httpx2@v2.4.0...v2.5.0)

Updates `httpx2` from 2.4.0 to 2.5.0
- [Release notes](https://github.com/pydantic/httpx2/releases)
- [Changelog](https://github.com/pydantic/httpx2/blob/main/src/httpx2/CHANGELOG.md)
- [Commits](pydantic/httpx2@v2.4.0...v2.5.0)

---
updated-dependencies:
- dependency-name: pydantic
  dependency-version: 2.13.4
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: dependencies
- dependency-name: pydantic-settings
  dependency-version: 2.14.2
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: dependencies
- dependency-name: pymongo
  dependency-version: 4.17.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: dependencies
- dependency-name: monty
  dependency-version: 2026.5.18
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: dependencies
- dependency-name: tqdm
  dependency-version: 4.68.3
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: dependencies
- dependency-name: pandas
  dependency-version: 3.0.3
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: dependencies
- dependency-name: numpy
  dependency-version: 2.4.6
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: dependencies
- dependency-name: paramiko
  dependency-version: 5.0.0
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: dependencies
- dependency-name: msgpack
  dependency-version: 1.2.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: dependencies
- dependency-name: orjson
  dependency-version: 3.11.9
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: dependencies
- dependency-name: boto3
  dependency-version: 1.43.38
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: dependencies
- dependency-name: click
  dependency-version: 8.4.2
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: dependencies
- dependency-name: ipython
  dependency-version: 9.15.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: dependencies
- dependency-name: regex
  dependency-version: 2026.6.28
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: dependencies
- dependency-name: azure-storage-blob
  dependency-version: 12.30.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: dependencies
- dependency-name: fastapi
  dependency-version: 0.138.2
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: dependencies
- dependency-name: uvicorn
  dependency-version: 0.49.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: dependencies
- dependency-name: moto
  dependency-version: 5.2.2
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: dependencies
- dependency-name: responses
  dependency-version: 0.26.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: dependencies
- dependency-name: anyio
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@dependabot dependabot Bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Jul 1, 2026
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